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[178293_at]

Description K03D7.9 /REP_DB=WormBase Gene ID /WP=CE18846 /TR=O45654 /GB=CAB04554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 81.4
(-3)
M 		109.7
(3)
P 		108.7
(2.8)
M 		92.7
(-0.6)
A 		28
B 92
(-1.6)
M 		114.5
(3)
A 		85
(-3)
A 		108.1
(1.7)
P 		30
C 94.4
(1.1)
A 		112.1
(3)
P 		56.7
(-3)
A 		83.4
(-0.1)
A 		55
avr 89.3
(-1.8) 		112.1
(3) 		83.5
(-3) 		94.7
(-0.7) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 86.6
(3)
A 		50.9
(-1.9)
A 		61.7
(-0.4)
A 		77
(1.7)
A 		43.2
(-3)
A 		50.9
(-1.9)
A 		43
B 70.8
(2.4)
A 		73.4
(3)
M 		46.6
(-2.8)
A 		51
(-1.9)
A 		55.2
(-1)
A 		45.8
(-3)
P 		28
C 65
(-0.2)
A 		94.9
(3)
A 		55.6
(-1.2)
A 		65.8
(-0.1)
A 		60.1
(-0.7)
A 		38.4
(-3)
A 		57
avr 74.1
(3) 		73.1
(2.8) 		54.6
(-1) 		64.6
(1) 		52.8
(-1.4) 		45
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 29.7
(3)
M 		23.8
(0.8)
P 		28.4
(2.5)
M 		13.6
(-3)
A 		16
B 29.3
(3)
M 		28.3
(2.4)
A 		19.7
(-3)
A 		23
(-0.9)
P 		10
C 31.3
(2.7)
A 		32.2
(3)
P 		19.8
(-1.1)
A 		14.1
(-3)
A 		18
avr 30.1
(3) 		28.1
(2.1) 		22.6
(-0.4) 		16.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 16
(0)
A 		18.1
(1.8)
A 		13.4
(-2.2)
A 		19.5
(3)
A 		13
(-2.5)
A 		12.4
(-3)
A 		7
B 24.6
(3)
A 		24.4
(2.9)
M 		11.3
(-3)
A 		13.5
(-2)
A 		22.4
(2)
A 		17.1
(-0.4)
P 		13
C 24.1
(1.2)
A 		29
(3)
A 		14.2
(-2.5)
A 		13.2
(-2.9)
A 		19.4
(-0.6)
A 		12.9
(-3)
A 		16
avr 21.6
(1.8) 		23.8
(3) 		13
(-3) 		15.4
(-1.7) 		18.3
(-0.1) 		14.1
(-2.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13014
Sequence Type Exemplar sequence
Representative Public ID K03D7.9 NCBI
Target Description K03D7.9 /REP_DB=WormBase Gene ID /WP=CE18846 /TR=O45654 /GB=CAB04554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075029 NCBI Caenorhabditis elegans K03D7.9 (K03D7.9) mRNA, complete cds. 11/11 None
K03D7.9 ENSEMBL cdna:known chromosome:CEL140:V:17489922:17491409:-1 gene:K03D7.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027353 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17489921-17491409(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03D7.9
Entrez Gene 186948 Entrez gene
SwissProt O45654 EMBL-EBI
WormBase CE18846 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04554 Hypothetical protein K03D7.9 [Caenorhabditis elegans] ref|NP_507430.1| K03D7.9 [Caenorhabditis elegans] 1.0E-106
blast CAA21002 Hypothetical protein Y38H6C.21 [Caenorhabditis elegans] ref|NP_507964.1| Y38H6C.21 [Caenorhabditis elegans] 4.0E-15
blast CAE56842 Hypothetical protein CBG24669 [Caenorhabditis briggsae] 8.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507430.1 5 21-43,63-82,94-116,136-158,167-189
K03D7.9 5 21-43,63-82,94-116,136-158,167-189
Sequence
Target Sequence 
>C. ELEGANS:178293_AT
tactgcccgatctcgagtggtttttcaccagggctggtgtggtttttgtcgggtactgct
gcggtacaacgattcgtgattctgtacatttcaaagtacaaatggctagtgacggggtcc
aacctgtcaaagctcataacctttgcctatgtactcagtattttctattgctgggtttat
ggttctttgcttggagcgaattcttctccgacatgggaagatatcgctttcgtagtgtac
aatttcatattttttataatgaccctaacttctggattattttattaccatctttaccaa
cttttgaaaaagctacattcagatgtgattccagaaactcaaatattataccgcgttgtt
cctatttatagtctacaagtggtcttcactttgatagctctaatgcaatgtatacttggc
tactatgaatataaggagatcaaaaatgttctctctgcagtttcaatgtttctacctcat
ttcaccccaattatcatttcattatcctacacagcgtccatgcagccaatacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGCCCGATCTCGAGTGGTTTTT 125 647 64 Antisense
GTCGGGTACTGCTGCGGTACAACGA 237 473 111 Antisense
GGTCCAACCTGTCAAAGCTCATAAC 147 503 179 Antisense
TAACCTTTGCCTATGTACTCAGTAT 694 637 200 Antisense
GGGTTTATGGTTCTTTGCTTGGAGC 279 497 236 Antisense
GCTTGGAGCGAATTCTTCTCCGACA 17 307 252 Antisense
ATTATACCGCGTTGTTCCTATTTAT 531 13 408 Antisense
AATGTTCTCTCTGCAGTTTCAATGT 694 163 508 Antisense
TCAATGTTTCTACCTCATTTCACCC 433 633 526 Antisense
ATCATTTCATTATCCTACACAGCGT 638 29 556 Antisense
ACAGCGTCCATGCAGCCAATACGAT 579 107 574 Antisense
Sequence Source Affymetrix Proprietary Database