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[178292_at] 7TM receptor, sre family

Description F57G9.2 /REP_DB=WormBase Gene ID /WP=CE17918 /TR=O62267 /GB=CAB05750.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 02      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 22
(-1.5)
A 		2.2
(-3)
A 		31.5
(-0.8)
A 		83.3
(3)
A 		81
B 8.9
(-3)
A 		30.2
(0.3)
A 		29.8
(0.2)
A 		47.6
(3)
P 		39
C 34.3
(-0.8)
P 		30.6
(-1.1)
A 		4.3
(-3)
A 		86.1
(3)
P 		82
avr 21.7
(-2.9) 		21
(-3) 		21.9
(-2.9) 		72.3
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 18.4
(0.1)
A 		2.6
(-3)
A 		33.3
(3)
A 		6.8
(-2.2)
A 		30.6
(2.5)
A 		29.5
(2.3)
A 		31
B 8.1
(-2.8)
A 		37.2
(3)
P 		7.3
(-3)
A 		22.3
(0)
A 		25.4
(0.6)
A 		22.8
(0.1)
P 		30
C 18.2
(-1.3)
A 		32.4
(1.4)
P 		9.6
(-3)
A 		40.7
(3)
A 		30.6
(1.1)
A 		33.5
(1.6)
A 		31
avr 14.9
(-3) 		24.1
(0.9) 		16.7
(-2.2) 		23.3
(0.6) 		28.9
(3) 		28.6
(2.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8
(0.8)
A 		0.5
(-3)
A 		8.2
(0.9)
A 		12.2
(3)
A 		12
B 2.8
(-3)
A 		7.5
(0.9)
A 		6.9
(0.4)
A 		10.1
(3)
P 		7
C 11.4
(1.6)
P 		8.8
(0.4)
A 		1.5
(-3)
A 		14.5
(3)
P 		13
avr 7.4
(-1.3) 		5.6
(-2.9) 		5.5
(-3) 		12.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.4
(-1.2)
A 		0.9
(-3)
A 		7.3
(1.6)
A 		1.7
(-2.4)
A 		9.2
(3)
A 		7.2
(1.6)
A 		8
B 2.8
(-2.4)
A 		12.4
(3)
P 		1.8
(-3)
A 		5.9
(-0.7)
A 		10.3
(1.8)
A 		8.5
(0.8)
P 		11
C 6.8
(0)
A 		9.9
(2.1)
P 		2.4
(-3)
A 		8.2
(1)
A 		9.9
(2.1)
A 		11.2
(3)
A 		9
avr 4.3
(-2.5) 		7.7
(0.9) 		3.8
(-3) 		5.3
(-1.5) 		9.8
(3) 		9
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3971
Sequence Type Exemplar sequence
Representative Public ID F57G9.2 NCBI
Target Description F57G9.2 /REP_DB=WormBase Gene ID /WP=CE17918 /TR=O62267 /GB=CAB05750.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064231 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-30) (sre-30) mRNA, complete cds. 11/11 None
GENEFINDER00000038201 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12399302:12408764:-1 9/11 None
F57G9.2 ENSEMBL cdna:known chromosome:CEL140:II:12404854:12406397:-1 gene:F57G9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12404850-12406394(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-30
Ensembl F57G9.2
Entrez Gene 186476 Entrez gene
SwissProt O62267 EMBL-EBI
WormBase CE17918 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05750 Hypothetical protein F57G9.2 [Caenorhabditis elegans] ref|NP_496632.1| Serpentine Receptor, class E (epsilon) family member (sre-30) [Caenorhabditis elegans] sp|O62267|SRE30_CAEEL Serpentine receptor class epsilon-30 (Protein sre-30) 0.0
blast CAB05749 Hypothetical protein F57G9.1 [Caenorhabditis elegans] ref|NP_496633.1| Serpentine Receptor, class E (epsilon) family member (sre-31) [Caenorhabditis elegans] sp|O62266|SRE31_CAEEL Serpentine receptor class epsilon-31 (Protein sre-31) 0.0
blast CAB05749 Hypothetical protein F57G9.1 [Caenorhabditis elegans] ref|NP_496633.1| Serpentine Receptor, class E (epsilon) family member (sre-31) [Caenorhabditis elegans] sp|O62266|SRE31_CAEEL Serpentine receptor class epsilon-31 (Protein sre-31) 1.0E-134
blast CAB05750 Hypothetical protein F57G9.2 [Caenorhabditis elegans] ref|NP_496632.1| Serpentine Receptor, class E (epsilon) family member (sre-30) [Caenorhabditis elegans] sp|O62267|SRE30_CAEEL Serpentine receptor class epsilon-30 (Protein sre-30) 1.0E-129
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 1.0E-105
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 5.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496632.1 7 27-49,62-84,121-143,163-185,189-211,254-276,281-303
F57G9.2 7 27-49,62-84,121-143,163-185,189-211,254-276,281-303
GENEFINDER00000038201 13 5-27,42-64,76-98,136-158,178-200,205-227,268-287,302-319,389-411,449-471,491-513,517-539,581-603
Sequence
Target Sequence 
>C. ELEGANS:178292_AT
atcagccaacttctatcaatttccatatcacttgcaattatcacccaaagtattggacct
tttctagcgagacttccttttgtgatttgtgcgcctttatctgtgttggtttttttattt
atcaagcataccaatcaatctcttctaaaagagatatgcaacccgaaacgaactcgaatt
ttcacagtttctcagcaatgtcaggtgaaggagaatttgcgagctttacggctaggcact
cgtttggtagtggttgtaatattttacatttcgatctgtggatttggaatcgccgcgctc
actttcggcttgattccggcagggtttgggcatttgattgagaattttctgtttttacat
ccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGCCAACTTCTATCAATTTCCA 354 29 526 Antisense
GTATTGGACCTTTTCTAGCGAGACT 197 451 575 Antisense
GACTTCCTTTTGTGATTTGTGCGCC 508 371 596 Antisense
TGTGCGCCTTTATCTGTGTTGGTTT 378 557 613 Antisense
AGCATACCAATCAATCTCTTCTAAA 656 77 650 Antisense
GAATTTTCACAGTTTCTCAGCAATG 427 325 701 Antisense
GAATTTGCGAGCTTTACGGCTAGGC 525 325 738 Antisense
TTACGGCTAGGCACTCGTTTGGTAG 124 1 751 Antisense
TCACTTTCGGCTTGATTCCGGCAGG 213 619 824 Antisense
ATTCCGGCAGGGTTTGGGCATTTGA 217 3 838 Antisense
GAGAATTTTCTGTTTTTACATCCCT 589 389 865 Antisense
Sequence Source Affymetrix Proprietary Database