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[178291_at]

Description C14B1.7 /REP_DB=WormBase Gene ID /WP=CE00904 /TR=Q17965 /GB=CAA85489.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 37      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 34.3
(3)
A 		18.7
(-2.9)
A 		18.5
(-3)
A 		19.3
(-2.7)
A 		16
B 12.4
(-0.9)
A 		17.9
(3)
A 		9.4
(-3)
A 		13.8
(0.1)
A 		9
C 20.1
(1.9)
A 		21.5
(3)
A 		13.8
(-3)
A 		21.4
(2.9)
A 		8
avr 22.3
(3) 		19.4
(0.9) 		13.9
(-3) 		18.2
(0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 5.4
(-3)
A 		17
(-2.7)
A 		11.7
(-2.8)
A 		89.9
(-0.6)
A 		167.1
(1.6)
A 		216.6
(3)
P 		211
B 16.7
(-2.6)
A 		9
(-2.9)
A 		5.8
(-3)
A 		63.1
(-1.1)
A 		148
(1.7)
A 		186.6
(3)
P 		181
C 15.6
(-2.9)
A 		14.7
(-2.9)
A 		13.3
(-3)
A 		34.7
(-2.2)
A 		164
(2.9)
P 		166.4
(3)
P 		153
avr 12.6
(-2.9) 		13.6
(-2.9) 		10.3
(-3) 		62.6
(-1.3) 		159.7
(2) 		189.9
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.5
(3)
A 		4.1
(-2.2)
A 		4.8
(-1.8)
A 		2.8
(-3)
A 		10
B 3.9
(1.6)
A 		4.4
(3)
A 		2.2
(-3)
A 		2.9
(-1.1)
A 		2
C 6.7
(3)
A 		6.2
(2)
A 		4.8
(-0.7)
A 		3.6
(-3)
A 		3
avr 7.7
(3) 		4.9
(-0.7) 		3.9
(-2) 		3.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 1
(-3)
A 		6
(-2.4)
A 		2.5
(-2.8)
A 		22.8
(-0.5)
A 		50.4
(2.7)
A 		52.7
(3)
P 		52
B 5.8
(-2.6)
A 		3
(-2.9)
A 		1.4
(-3)
A 		16.7
(-1.7)
A 		60.1
(2.2)
A 		69.6
(3)
P 		68
C 5.8
(-2.7)
A 		4.5
(-2.9)
A 		3.4
(-3)
A 		7
(-2.6)
A 		53.1
(2.7)
P 		55.7
(3)
P 		52
avr 4.2
(-2.8) 		4.5
(-2.8) 		2.4
(-3) 		15.5
(-1.6) 		54.5
(2.5) 		59.3
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6708
Sequence Type Exemplar sequence
Representative Public ID C14B1.7 NCBI
Target Description C14B1.7 /REP_DB=WormBase Gene ID /WP=CE00904 /TR=Q17965 /GB=CAA85489.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065353 NCBI Caenorhabditis elegans C14B1.7 (C14B1.7) mRNA, complete cds. 11/11 A 
SNAP00000040965 ENSEMBL cdna:SNAP chromosome:CEL140:III:3720278:3723575:-1 11/11 None
GENEFINDER00000040976 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3720278:3723575:-1 11/11 None
C14B1.7 ENSEMBL cdna:known chromosome:CEL140:III:3719951:3723575:-1 gene:C14B1.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3720277-3722490(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14B1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497754 C14B1.7 [Caenorhabditis elegans] 0.0
blast CAA86741 Hypothetical protein C16C10.3 [Caenorhabditis elegans] ref|NP_497834.1| C16C10.3 [Caenorhabditis elegans] sp|Q09249|YQ53_CAEEL Hypothetical protein C16C10.3 in chromosome III 0.0
blast CAE58274 Hypothetical protein CBG01380 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 2.7E-46
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178291_AT
agattcaacctggatatcgcccacatctcgtcgtggtcattgcacagatagcttcacatg
cacgtgtcttcccttcgaatatcactggaagaaaagcaatggagcaaaatgtgccatcgg
gaacatgcgtggacaacgtcccgacttcttatggttacgatgaattcattttgtcgtcac
ggacgcccctcatcggtacagttcgtccgtgcaagtacacaattctaatcaatgatgcga
actggtccaaaaacgagattatgcacttgacgtacttccgagcatttggtcatcaagttt
cctacaagccaccatcggtaccagatgtgctctatgccgctgaaaatttggccaagcgag
gacgaaacaactacaagattcaccagcgtcacgtgaacttgcaagcagtggagaattcca
tcatcggagatcattcggaactcatcaacgaagatatgagggaagaacttgcggctgcca
ttgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTCAACCTGGATATCGCCCACA 569 65 1493 Antisense
ACATCTCGTCGTGGTCATTGCACAG 49 107 1515 Antisense
GATAGCTTCACATGCACGTGTCTTC 611 423 1539 Antisense
CGTGTCTTCCCTTCGAATATCACTG 409 245 1555 Antisense
ACATGCGTGGACAACGTCCCGACTT 327 105 1615 Antisense
GTCCCGACTTCTTATGGTTACGATG 554 475 1630 Antisense
CTCATCGGTACAGTTCGTCCGTGCA 446 227 1681 Antisense
ACGTACTTCCGAGCATTTGGTCATC 217 93 1762 Antisense
AGATGTGCTCTATGCCGCTGAAAAT 327 67 1815 Antisense
ACTACAAGATTCACCAGCGTCACGT 348 101 1862 Antisense
GAAGAACTTGCGGCTGCCATTGTCG 644 337 1954 Antisense
Sequence Source Affymetrix Proprietary Database