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[178290_at]

Description K03B8.7 /REP_DB=WormBase Gene ID /WP=CE06081 /TR=Q21183 /GB=CAA98506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 19      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 4.7
(-3)
A 		20.8
(-1)
A 		6.2
(-2.8)
A 		53.8
(3)
A 		49
B 33.1
(3)
A 		6.9
(-2.2)
A 		19.1
(0.2)
A 		2.9
(-3)
A 		30
C 15.4
(-3)
A 		46.8
(3)
A 		21.5
(-1.8)
A 		43.3
(2.3)
A 		31
avr 17.7
(-2.3) 		24.8
(0.1) 		15.6
(-3) 		33.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4156
1 2 3 4 5 6 range
A 7.5
(-3)
A 		25.8
(-3)
A 		436.3
(-2.3)
P 		3818.4
(3)
P 		2025.1
(0.2)
P 		15.5
(-3)
A 		3811
B 8
(-3)
A 		42.6
(-2.9)
A 		440.8
(-2.1)
P 		2896.6
(3)
P 		2452
(2.1)
P 		53
(-2.9)
P 		2889
C 6.5
(-3)
A 		6.7
(-3)
A 		491.6
(-2.3)
P 		4162.6
(3)
P 		1737.7
(-0.5)
P 		97.7
(-2.9)
P 		4156
avr 7.3
(-3) 		25
(-3) 		456.2
(-2.3) 		3625.9
(3) 		2071.6
(0.4) 		55.4
(-2.9) 		3619
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.7
(-2.9)
A 		4.5
(-0.2)
A 		1.6
(-3)
A 		7.9
(3)
A 		6
B 10.6
(3)
A 		1.7
(-2.3)
A 		4.4
(-0.7)
A 		0.6
(-3)
A 		10
C 5.1
(-3)
A 		13.4
(3)
A 		7.5
(-1.3)
A 		7.3
(-1.4)
A 		8
avr 5.8
(0.9) 		6.5
(3) 		4.5
(-3) 		5.3
(-0.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 995
1 2 3 4 5 6 range
A 1.4
(-3)
A 		9.2
(-3)
A 		95
(-2.4)
P 		968.4
(3)
P 		611.1
(0.8)
P 		3.8
(-3)
A 		967
B 2.8
(-3)
A 		14.2
(-2.9)
A 		107
(-2.4)
P 		767.2
(1.6)
P 		996.2
(3)
P 		19.8
(-2.9)
P 		993
C 2.4
(-3)
A 		2
(-3)
A 		125.1
(-2.1)
P 		837.1
(3)
P 		562.3
(1)
P 		32.7
(-2.8)
P 		835
avr 2.2
(-3) 		8.5
(-3) 		109
(-2.3) 		857.6
(3) 		723.2
(2.1) 		18.8
(-2.9) 		855
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14300
Sequence Type Exemplar sequence
Representative Public ID K03B8.7 NCBI
Target Description K03B8.7 /REP_DB=WormBase Gene ID /WP=CE06081 /TR=Q21183 /GB=CAA98506.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073495 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-3) (grl-3) mRNA, complete cds. 11/11 None
GENEFINDER00000002797 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11413566:11415357:1 11/11 None
K03B8.7 ENSEMBL cdna:known chromosome:CEL140:V:11413566:11415357:1 gene:K03B8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002787 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11414196-11415357(+) 97.71 97.71
Public Domain and Genome References
Gene Title
Gene Symbol grl-3
Ensembl K03B8.7
Entrez Gene 186928 Entrez gene
SwissProt Q21183 EMBL-EBI
WormBase CE06081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98506 Hypothetical protein K03B8.7 [Caenorhabditis elegans] ref|NP_505896.1| GRound-Like (grd related) family member (grl-3) [Caenorhabditis elegans] 1.0E-150
blast CAE75241 Hypothetical protein CBG23193 [Caenorhabditis briggsae] 2.0E-98
blast AAA92541 Ground-like (grd related) protein 9 [Caenorhabditis elegans] ref|NP_504706.1| GRound-Like (grd related) family member (grl-9) [Caenorhabditis elegans] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.3E-30
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.3E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505896.1 1 5-27
K03B8.7 1 5-27
GENEFINDER00000002797 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:178290_AT
gaaacatcgacttttcagccaactccaagttttgatcatcagaaaacaatgaagcttttg
ccaacattgaacgcgaaggaagttcaaaggatgaaaaatgaaataatggaaattagcaca
aataaaacaagaaaatctgaaattcggttcagtcccccaatcgaatctgacagagtaaat
gggttacatagaatctctcatatgatgaaagaaatggaaggaatgttgatgctcatgaga
gacgaaatatccattcaaattgaaaattcaagtccagtaaagttgttggaagaagctgca
acgaggacagagattgactcttctttgcacgcatctcccatgacaagagcgataaggcac
aagagagcggagacagaaaactgcaatgatgaaaaattgagaaaattgataaaagagaac
atcagaagggatgcaaaaagttccaaaagagagattcaaaaagctgcgaacaaggaattc
ggcggacattttaacgtaatctgttcaccatgcgaattttcattcgtcgttgcgtctcag
aaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACATCGACTTTTCAGCCAACTC 217 357 262 Antisense
GACTTTTCAGCCAACTCCAAGTTTT 50 371 270 Antisense
GAAGCTTTTGCCAACATTGAACGCG 228 343 312 Antisense
TCTGAAATTCGGTTCAGTCCCCCAA 118 609 397 Antisense
CAGTCCCCCAATCGAATCTGACAGA 40 207 411 Antisense
AATGGGTTACATAGAATCTCTCATA 378 163 439 Antisense
CACGCATCTCCCATGACAAGAGCGA 108 201 589 Antisense
TTCGGCGGACATTTTAACGTAATCT 88 469 739 Antisense
AACGTAATCTGTTCACCATGCGAAT 708 143 754 Antisense
GAATTTTCATTCGTCGTTGCGTCTC 499 325 775 Antisense
CATTCGTCGTTGCGTCTCAGAAATA 199 217 782 Antisense
Sequence Source Affymetrix Proprietary Database