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[178289_at]

Description F55C5.1 /REP_DB=WormBase Gene ID /WP=CE11150 /TR=Q20815 /GB=CAB01566.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 5.4
(-3)
A 		11.6
(-0.5)
A 		15.2
(0.9)
A 		20.5
(3)
A 		15
B 10.7
(-1.5)
A 		15.2
(1.2)
A 		18.2
(3)
A 		8.2
(-3)
A 		10
C 8.1
(-3)
A 		22.3
(-1.8)
A 		14.6
(-2.4)
A 		77.8
(3)
A 		70
avr 8.1
(-3) 		16.4
(-1.2) 		16
(-1.3) 		35.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 24.3
(-2.9)
A 		14.5
(-3)
A 		12.9
(-3)
A 		28.6
(-2.8)
A 		363
(0.4)
A 		636.9
(3)
P 		624
B 9.9
(-3)
A 		10.4
(-3)
A 		15
(-2.9)
A 		15.8
(-2.9)
A 		460.8
(1.4)
P 		621.3
(3)
P 		611
C 11
(-3)
A 		12.5
(-3)
A 		19.7
(-2.9)
A 		32.7
(-2.8)
A 		409.6
(0.7)
A 		664
(3)
P 		653
avr 15.1
(-3) 		12.5
(-3) 		15.9
(-3) 		25.7
(-2.9) 		411.1
(0.8) 		640.7
(3) 		628
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2
(-3)
A 		2.5
(-1.5)
A 		4
(3)
A 		3
(0)
A 		2
B 3.4
(1.1)
A 		3.7
(1.8)
A 		4.2
(3)
A 		1.7
(-3)
A 		3
C 2.7
(-3)
A 		6.4
(-0.9)
A 		5.1
(-1.6)
A 		13.1
(3)
A 		10
avr 2.7
(-3) 		4.2
(-0.2) 		4.4
(0.2) 		5.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 4.5
(-2.9)
A 		5.2
(-2.9)
A 		2.8
(-3)
A 		7.3
(-2.8)
A 		109.5
(1.2)
A 		155.1
(3)
P 		152
B 3.4
(-3)
A 		3.5
(-3)
A 		3.6
(-3)
A 		4.2
(-3)
A 		187.2
(1.8)
P 		231.7
(3)
P 		228
C 4.1
(-3)
A 		3.8
(-3)
A 		5
(-3)
A 		6.6
(-2.9)
A 		132.6
(0.5)
A 		222.3
(3)
P 		219
avr 4
(-3) 		4.2
(-3) 		3.8
(-3) 		6
(-2.9) 		143.1
(1.2) 		203
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13814
Sequence Type Exemplar sequence
Representative Public ID F55C5.1 NCBI
Target Description F55C5.1 /REP_DB=WormBase Gene ID /WP=CE11150 /TR=Q20815 /GB=CAB01566.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073675 NCBI Caenorhabditis elegans F55C5.1 (F55C5.1) mRNA, complete cds. 11/11 None
SNAP00000005341 ENSEMBL cdna:SNAP chromosome:CEL140:V:12266088:12266411:-1 11/11 None
GENEFINDER00000005361 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12266088:12266411:-1 11/11 None
F55C5.1 ENSEMBL cdna:known chromosome:CEL140:V:12266088:12266411:-1 gene:F55C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12266087-12266411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C5.1
Entrez Gene 179681 Entrez gene
SwissProt Q20815 EMBL-EBI
WormBase CE11150 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01566 Hypothetical protein F55C5.1 [Caenorhabditis elegans] ref|NP_506076.1| F55C5.1 [Caenorhabditis elegans] 3.0E-56
blast CAA94382 Hypothetical protein ZC168.6 [Caenorhabditis elegans] ref|NP_501989.1| ZC168.6 [Caenorhabditis elegans] 1.0E-48
blast 1M1S Chain , Structure Of Wr4, A C.Elegans Msp Family Member 6.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.9E-38
Sequence
Target Sequence 
>C. ELEGANS:178289_AT
ccaccaactggaaacttccctgcatctggaggtaattcggttcacaacatcgtctcggag
tcggattctcgtttggcattcaaggtgaaatcgtcgaacaatgagcactaccgtgttcgt
cccgtctacggattcattgatccgaagggaaaaaccaagttggatatcaatcgtattgct
ggaccaccaaaagttgacaagcttgtcattcaatatgctgaagtgccagccgatgagact
gatcctcaagcaccattcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCAACTGGAAACTTCCCTGCAT 309 273 28 Antisense
GAAACTTCCCTGCATCTGGAGGTAA 380 357 38 Antisense
GTAATTCGGTTCACAACATCGTCTC 345 455 59 Antisense
ACATCGTCTCGGAGTCGGATTCTCG 152 105 74 Antisense
GGAGTCGGATTCTCGTTTGGCATTC 523 511 84 Antisense
AACAATGAGCACTACCGTGTTCGTC 700 133 124 Antisense
TTCGTCCCGTCTACGGATTCATTGA 454 695 143 Antisense
ATATCAATCGTATTGCTGGACCACC 86 21 191 Antisense
GGACCACCAAAAGTTGACAAGCTTG 495 521 208 Antisense
GTGCCAGCCGATGAGACTGATCCTC 140 479 250 Antisense
ACTGATCCTCAAGCACCATTCAAAG 83 99 265 Antisense
Sequence Source Affymetrix Proprietary Database