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[178288_at]

Description T11A5.5 /REP_DB=WormBase Gene ID /WP=CE06411 /TR=Q22385 /GB=CAA96685.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 33      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 29.2
(-3)
A 		59
(3)
A 		57.2
(2.6)
A 		49.9
(1.2)
A 		30
B 15.8
(-3)
A 		34.2
(-0.8)
A 		65.7
(3)
A 		52.6
(1.4)
M 		50
C 32.3
(-0.5)
A 		39.8
(0.5)
A 		14.4
(-3)
A 		57.8
(3)
A 		43
avr 25.8
(-3) 		44.3
(1) 		45.8
(1.3) 		53.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 8.8
(-3)
A 		36.6
(-0.1)
A 		66
(3)
A 		20.7
(-1.8)
A 		15.6
(-2.3)
A 		59.4
(2.3)
A 		57
B 56.9
(3)
A 		33.4
(0.4)
A 		3.5
(-3)
A 		47.4
(1.9)
A 		17.3
(-1.4)
A 		43.5
(1.5)
P 		53
C 6.8
(-3)
A 		19.8
(-1.9)
A 		78.7
(3)
A 		37.2
(-0.5)
A 		7.7
(-2.9)
A 		50
(0.6)
P 		72
avr 24.2
(-1.3) 		29.9
(-0.4) 		49.4
(2.7) 		35.1
(0.5) 		13.5
(-3) 		51
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.6
(-0.4)
A 		12.8
(1.3)
A 		15
(3)
A 		7.3
(-3)
A 		8
B 5
(-3)
A 		8.4
(-1)
A 		15.2
(3)
A 		11.2
(0.6)
M 		10
C 10.7
(2.3)
A 		11.4
(3)
A 		5
(-3)
A 		9.7
(1.4)
A 		6
avr 8.8
(-3) 		10.9
(1.3) 		11.7
(3) 		9.4
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.6
(-3)
A 		13
(2.3)
A 		14.4
(3)
A 		5.3
(-1.3)
A 		4.7
(-1.6)
A 		14.5
(3)
A 		13
B 19.8
(3)
A 		11.1
(0.3)
A 		0.8
(-3)
A 		12.5
(0.7)
A 		7
(-1)
A 		16.2
(1.9)
P 		19
C 2.5
(-3)
A 		6
(-1.8)
A 		20
(3)
A 		7.5
(-1.3)
A 		2.5
(-3)
A 		16.7
(1.9)
P 		18
avr 8
(-1.2) 		10
(-0.1) 		11.7
(0.8) 		8.4
(-1) 		4.7
(-3) 		15.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12395
Sequence Type Exemplar sequence
Representative Public ID T11A5.5 NCBI
Target Description T11A5.5 /REP_DB=WormBase Gene ID /WP=CE06411 /TR=Q22385 /GB=CAA96685.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073146 NCBI Caenorhabditis elegans T11A5.5 (T11A5.5) mRNA, complete cds. 11/11 None
SNAP00000037717 ENSEMBL cdna:SNAP chromosome:CEL140:V:9882927:9883660:1 11/11 None
GENEFINDER00000037719 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9882927:9883660:1 11/11 None
T11A5.5 ENSEMBL cdna:known chromosome:CEL140:V:9882696:9883660:1 gene:T11A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9882695-9883660(+) 96.19 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-31
Ensembl T11A5.5
Entrez Gene 188407 Entrez gene
SwissProt Q22385 EMBL-EBI
WormBase CE06411 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5344 oxygen transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96685 Hypothetical protein T11A5.5 [Caenorhabditis elegans] ref|NP_505547.1| T11A5.5 [Caenorhabditis elegans] 1.0E-127
blast CAA96685 Hypothetical protein T11A5.5 [Caenorhabditis elegans] ref|NP_505547.1| T11A5.5 [Caenorhabditis elegans] 7.0E-83
blast CAE72272 Hypothetical protein CBG19392 [Caenorhabditis briggsae] 3.0E-33
blast CAE72272 Hypothetical protein CBG19392 [Caenorhabditis briggsae] 3.0E-19
blast CAB03276 Hypothetical protein AH10.2 [Caenorhabditis elegans] emb|CAB02689.1| Hypothetical protein AH10.2 [Caenorhabditis elegans] ref|NP_506503.1| AH10.2 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505547.1 2 20-42,203-225
T11A5.5 2 20-42,203-225
SNAP00000037717 1 126-148
GENEFINDER00000037719 1 126-148
Sequence
Target Sequence 
>C. ELEGANS:178288_AT
gaattggcttgtcaactctaaatcgtgatcctgttttctacaagttcaaacttgaaaata
ctggacagcatctccgaaacattttcgaccaagatgatgttgtcgtgttcatccagtcag
tttttgagtgcgacgaaggatttttcggatcgaaatgcctactcaaaaaagctccaagca
cttcgacgattgcttctaaaatgacttcaacaactacaatgacaactacaacaacaacaa
tcactacttcaacggaatctgaaaaacaagcatcatcgaaaggagctggtttatcaatgg
gtcttgaacattataacagcatcatcatcgttgtgctagtgatcatcatcataacacttc
tcattctaattgccgttttcgctgttctcctcttttcgtctcgctcacaaaatcaacaca
tcattattgctggcagaaaatccgcatctaaatgcaagaaacttgactttgagggattcg
aaggaaagagttttgaacgttcaaatgattttcaatatgaggagccacgttacacagcag
caccatttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGGCTTGTCAACTCTAAATCG 471 321 299 Antisense
TAAATCGTGATCCTGTTTTCTACAA 622 641 317 Antisense
ATGTTGTCGTGTTCATCCAGTCAGT 11 47 395 Antisense
TTTCGGATCGAAATGCCTACTCAAA 643 669 441 Antisense
AAGCTCCAAGCACTTCGACGATTGC 104 151 467 Antisense
GGAGCTGGTTTATCAATGGGTCTTG 331 521 580 Antisense
ACAGCATCATCATCGTTGTGCTAGT 473 109 614 Antisense
GATCATCATCATAACACTTCTCATT 386 421 639 Antisense
ATTCTAATTGCCGTTTTCGCTGTTC 258 11 661 Antisense
CTTTTCGTCTCGCTCACAAAATCAA 191 223 690 Antisense
CACGTTACACAGCAGCACCATTTGG 555 195 824 Antisense
Sequence Source Affymetrix Proprietary Database