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[178287_at] 7TM receptor, sre family

Description W05H5.5 /REP_DB=WormBase Gene ID /WP=CE14644 /TR=P91842 /GB=CAB03480.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 33      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 5.5
(-3)
A 		10.6
(1.5)
A 		11.4
(2.2)
A 		12.3
(3)
A 		7
B 4.3
(-3)
A 		13.5
(-1.4)
A 		39.3
(3)
A 		6.3
(-2.7)
A 		35
C 5.2
(-2.9)
A 		23.5
(0.5)
A 		4.5
(-3)
A 		36.7
(3)
A 		32
avr 5
(-3) 		15.9
(1.9) 		18.4
(3) 		18.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.1
(0.8)
A 		2.5
(-3)
A 		14.6
(3)
A 		7.7
(-0.4)
A 		3.4
(-2.6)
A 		8.4
(-0.1)
A 		12
B 7
(-0.1)
A 		3
(-3)
A 		8.5
(1)
A 		3.2
(-2.9)
A 		9.5
(1.8)
A 		11.2
(3)
A 		8
C 5.3
(-2.4)
A 		30
(3)
A 		4.9
(-2.5)
A 		6.3
(-2.2)
A 		7.1
(-2)
A 		2.6
(-3)
A 		27
avr 7.5
(-1.2) 		11.8
(3) 		9.3
(0.5) 		5.7
(-3) 		6.7
(-2) 		7.4
(-1.3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(-2)
A 		2.3
(-0.5)
A 		3
(3)
A 		1.8
(-3)
A 		1
B 1.4
(-2.9)
A 		3.3
(-1.5)
A 		9.1
(3)
A 		1.3
(-3)
A 		8
C 1.7
(-2.9)
A 		6.8
(3)
A 		1.6
(-3)
A 		6.2
(2.3)
A 		5
avr 1.7
(-3) 		4.1
(2) 		4.6
(3) 		3.1
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.9
(-0.4)
A 		0.9
(-3)
A 		3.2
(3)
A 		2
(-0.1)
A 		1
(-2.7)
A 		2.1
(0.1)
A 		2
B 2.4
(-0.2)
A 		1
(-2.6)
A 		2.1
(-0.7)
A 		0.8
(-3)
A 		3.8
(2.3)
A 		4.2
(3)
A 		3
C 2
(-2.2)
A 		9.2
(3)
A 		1.3
(-2.7)
A 		1.3
(-2.7)
A 		2.3
(-2)
A 		0.9
(-3)
A 		8
avr 2.1
(-1.2) 		3.7
(3) 		2.2
(-0.9) 		1.4
(-3) 		2.4
(-0.4) 		2.4
(-0.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3589
Sequence Type Exemplar sequence
Representative Public ID W05H5.5 NCBI
Target Description W05H5.5 /REP_DB=WormBase Gene ID /WP=CE14644 /TR=P91842 /GB=CAB03480.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064247 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-35) (sre-35) mRNA, complete cds. 11/11 None
SNAP00000019748 ENSEMBL cdna:SNAP chromosome:CEL140:II:12451496:12452757:-1 9/11 None
GENEFINDER00000019752 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12451496:12453480:-1 11/11 None
W05H5.5 ENSEMBL cdna:known chromosome:CEL140:II:12451496:12452757:-1 gene:W05H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12451733-12452754(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-35
Ensembl W05H5.5
Entrez Gene 189225 Entrez gene
SwissProt Q5FC42 EMBL-EBI
WormBase CE37998 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAI46624 Hypothetical protein W05H5.5 [Caenorhabditis elegans] ref|NP_496648.2| Serpentine Receptor, class E (epsilon) family member (sre-35) [Caenorhabditis elegans] 0.0
blast CAI46624 Hypothetical protein W05H5.5 [Caenorhabditis elegans] ref|NP_496648.2| Serpentine Receptor, class E (epsilon) family member (sre-35) [Caenorhabditis elegans] 1.0E-179
blast CAI46624 Hypothetical protein W05H5.5 [Caenorhabditis elegans] ref|NP_496648.2| Serpentine Receptor, class E (epsilon) family member (sre-35) [Caenorhabditis elegans] 1.0E-175
blast CAH60791 Hypothetical protein W05H5.8 [Caenorhabditis elegans] ref|NP_001022395.1| Serpentine Receptor, class E (epsilon) family member (sre-34) [Caenorhabditis elegans] 1.0E-174
blast CAH60791 Hypothetical protein W05H5.8 [Caenorhabditis elegans] ref|NP_001022395.1| Serpentine Receptor, class E (epsilon) family member (sre-34) [Caenorhabditis elegans] 1.0E-149
blast T26199 hypothetical protein W05H5.5 - Caenorhabditis elegans 1.0E-148
blast CAH60791 Hypothetical protein W05H5.8 [Caenorhabditis elegans] ref|NP_001022395.1| Serpentine Receptor, class E (epsilon) family member (sre-34) [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.1E-83
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.6E-33
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496648.2 7 29-51,64-86,124-146,167-189,199-218,252-274,284-306
W05H5.5 7 29-51,64-86,124-146,167-189,199-218,252-274,284-306
SNAP00000019748 6 29-51,64-86,124-146,167-189,215-237,249-268
GENEFINDER00000019752 6 38-60,98-120,141-163,173-192,226-248,258-280
Sequence
Target Sequence 
>C. ELEGANS:178287_AT
cggttttctttctctggtatgtactaatcgccggtaaacttatcataattgcctatcggc
tggactttctaaaaattgatattccgattggagagcacacggacatctggacagatgata
ttggaaaaatgctcaatgtcaataatttgaatggacttgagcttattctgctttcaggat
ttcttcaatggtattacatgtattcctttatttttgtggtgttggcaatggtggtggaac
ggacaattgcttcggttttgatagataactatgagtctaacactcgactgttaattcccg
caattctagtcgtcacaagtcaattcctatcggtgtctgtatcttttgcgctactcttcc
acaaaattcacccttgcgacgctcaacttccatggattattagttgtgtcctgtctttga
tggcgtgtgtcttcctaaaactgttgaacgaatccttccagcgggaaatcaagaacccgc
ttggctaccgtcttgtgataactgtgctcagttgcattgctctctatggcattggaatcg
ctgctctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTTTTCTTTCTCTGGTATGTACT 501 243 221 Antisense
TGCCTATCGGCTGGACTTTCTAAAA 606 585 270 Antisense
ATTCCCGCAATTCTAGTCGTCACAA 309 9 514 Antisense
GTCGTCACAAGTCAATTCCTATCGG 144 463 529 Antisense
ATCGGTGTCTGTATCTTTTGCGCTA 291 35 549 Antisense
CTTCCACAAAATTCACCCTTGCGAC 498 219 576 Antisense
TGTCTTTGATGGCGTGTGTCTTCCT 292 559 632 Antisense
ACTGTTGAACGAATCCTTCCAGCGG 169 97 660 Antisense
GGCTACCGTCTTGTGATAACTGTGC 121 539 703 Antisense
GCTCAGTTGCATTGCTCTCTATGGC 610 299 726 Antisense
TATGGCATTGGAATCGCTGCTCTCA 219 655 745 Antisense
Sequence Source Affymetrix Proprietary Database