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[178286_at]

Description C40C9.3 /REP_DB=WormBase Gene ID /WP=CE05400 /TR=Q18555 /GB=CAA94205.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 2.2
(-2.9)
A 		1.4
(-3)
A 		3.4
(-2.8)
A 		51.7
(3)
A 		50
B 2.3
(-0.6)
A 		3.4
(2.7)
A 		1.5
(-3)
A 		3.5
(3)
A 		2
C 4.5
(-2.9)
A 		2.4
(-3)
A 		4.8
(-2.9)
A 		100.7
(3)
P 		98
avr 3
(-2.9) 		2.4
(-3) 		3.2
(-2.9) 		52
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.2
(-1.9)
A 		3.4
(-1.7)
A 		3.7
(-1.5)
A 		1.7
(-3)
A 		9.3
(2.8)
A 		9.6
(3)
A 		8
B 4.3
(-2.3)
A 		2.2
(-3)
A 		2.3
(-3)
A 		4.4
(-2.3)
A 		7.8
(-1.1)
A 		20.1
(3)
A 		18
C 1.6
(-3)
A 		4.2
(-0.3)
A 		1.7
(-2.9)
A 		2.5
(-2.1)
A 		7.3
(3)
A 		5.4
(1)
A 		6
avr 3
(-2.7) 		3.3
(-2.5) 		2.6
(-3) 		2.9
(-2.8) 		8.1
(0.6) 		11.7
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.8
(-2.6)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		7.6
(3)
A 		7
B 0.7
(1)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.7
(1)
A 		1
C 1.5
(-2.7)
A 		0.7
(-3)
A 		1.7
(-2.6)
A 		17
(3)
P 		16
avr 1
(-2.7) 		0.6
(-3) 		1
(-2.7) 		8.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.5)
A 		1.2
(-1)
A 		0.8
(-2)
A 		0.4
(-3)
A 		2.8
(3)
A 		2.3
(1.8)
A 		2
B 1.5
(-2.2)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		1.2
(-2.5)
A 		3.2
(-0.7)
A 		7.5
(3)
A 		7
C 0.6
(-2.4)
A 		1.3
(-0.2)
A 		0.4
(-3)
A 		0.5
(-2.7)
A 		2.3
(3)
A 		1.8
(1.4)
A 		2
avr 0.9
(-2.5) 		1.1
(-2.1) 		0.6
(-3) 		0.7
(-2.8) 		2.8
(1) 		3.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17736
Sequence Type Exemplar sequence
Representative Public ID C40C9.3 NCBI
Target Description C40C9.3 /REP_DB=WormBase Gene ID /WP=CE05400 /TR=Q18555 /GB=CAA94205.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077885 NCBI Caenorhabditis elegans C40C9.3 (C40C9.3) mRNA, complete cds. 11/11 None
SNAP00000030577 ENSEMBL cdna:SNAP chromosome:CEL140:X:13647537:13648253:1 11/11 None
C40C9.3 ENSEMBL cdna:known chromosome:CEL140:X:13647537:13648253:1 gene:C40C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13647536-13648253(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40C9.3
Entrez Gene 183358 Entrez gene
SwissProt Q18555 EMBL-EBI
WormBase CE05400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94205 Hypothetical protein C40C9.3 [Caenorhabditis elegans] ref|NP_510286.1| C40C9.3 [Caenorhabditis elegans] 1.0E-113
blast CAA94205 Hypothetical protein C40C9.3 [Caenorhabditis elegans] ref|NP_510286.1| C40C9.3 [Caenorhabditis elegans] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:178286_AT
ttctggcgtacgctattgccgattcctcatattttggacctggtttatcaaatcaagtcg
aaaaaatatttttcaatagcaacccttcatcagaatgcgttgatgacggcaaactcttca
agcaatgtttcggagataaaagcatacctcagtttgcagacgtagttggcacgctaacaa
ctgaatggctagattcttcaatttttgtcgatgaaacacgcgccgcttcgaaatgcatta
gaacgccaacatgtaacaagatcaaacttgcaaagtatcttatggatttaattgtttata
gaggtaacaaattcttagcccaggactcgactgtttcaataaggcaagttgttgaggttt
ctaagaaacccaaaaaaatgcataatgaaatactggctgccacatttgggtgctcaatgg
tagacttcagtgggccagagtttaatgaaaagtactctagatgcattacaagttttcaaa
aatgtgatgaaaatgctcaaaagacaagagtcttaaaagctgttatggtattcaacgagc
tacttcaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGCGTACGCTATTGCCGATTC 179 693 41 Antisense
GCCGATTCCTCATATTTTGGACCTG 100 285 58 Antisense
TAGCAACCCTTCATCAGAATGCGTT 463 651 117 Antisense
GATGACGGCAAACTCTTCAAGCAAT 422 411 142 Antisense
AAGCATACCTCAGTTTGCAGACGTA 459 151 180 Antisense
TGCAGACGTAGTTGGCACGCTAACA 254 577 195 Antisense
ATGAAACACGCGCCGCTTCGAAATG 211 43 251 Antisense
TTAGCCCAGGACTCGACTGTTTCAA 104 683 355 Antisense
ATACTGGCTGCCACATTTGGGTGCT 654 23 430 Antisense
GGGTGCTCAATGGTAGACTTCAGTG 134 497 448 Antisense
GGTATTCAACGAGCTACTTCAAATC 68 505 567 Antisense
Sequence Source Affymetrix Proprietary Database