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[178284_s_at]

Description M01E5.6 /REP_DB=WormBase Gene ID /WP=CE12286 /TR=O17968 /GB=CAB03290.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 41.2
(2.7)
A 		42.3
(3)
A 		16.7
(-3)
A 		36.1
(1.5)
A 		26
B 67.3
(-0.3)
A 		46.3
(-2.2)
A 		37.8
(-3)
A 		104.3
(3)
A 		67
C 41.2
(0.2)
A 		71.3
(3)
A 		7.6
(-3)
A 		10.6
(-2.7)
A 		64
avr 49.9
(2.4) 		53.3
(3) 		20.7
(-3) 		50.3
(2.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 62.8
(-1.2)
A 		22.7
(-2.5)
A 		50.6
(-1.6)
A 		8.3
(-3)
A 		27.3
(-2.4)
A 		188.3
(3)
P 		180
B 43.3
(-2.8)
A 		35.1
(-3)
A 		64.1
(-2.1)
A 		48.9
(-2.6)
A 		63
(-2.2)
A 		236.5
(3)
P 		201
C 25.5
(-2.8)
A 		20.5
(-3)
A 		18.6
(-3)
A 		42.2
(-2.4)
A 		71.6
(-1.6)
A 		249.9
(3)
P 		231
avr 43.9
(-2.5) 		26.1
(-3) 		44.4
(-2.4) 		33.1
(-2.8) 		54
(-2.2) 		224.9
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15
(3)
A 		9.2
(-0.3)
A 		4.4
(-3)
A 		5.3
(-2.5)
A 		11
B 21.5
(2.7)
A 		11.4
(-1.8)
A 		8.8
(-3)
A 		22.2
(3)
A 		13
C 13.6
(0.8)
A 		20.5
(3)
A 		2.7
(-2.7)
A 		1.8
(-3)
A 		19
avr 16.7
(3) 		13.7
(1.4) 		5.3
(-3) 		9.8
(-0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 11.6
(-1.7)
A 		8.1
(-2.2)
A 		11
(-1.8)
A 		2.1
(-3)
A 		8.2
(-2.2)
A 		45.8
(3)
P 		44
B 15.1
(-2.7)
A 		11.7
(-3)
A 		15.6
(-2.7)
A 		12.9
(-2.9)
A 		25.6
(-1.9)
A 		88.2
(3)
P 		77
C 9.4
(-2.6)
A 		6.3
(-2.9)
A 		4.7
(-3)
A 		8.5
(-2.7)
A 		23.2
(-1.6)
A 		83.6
(3)
P 		79
avr 12
(-2.6) 		8.7
(-2.9) 		10.4
(-2.8) 		7.8
(-3) 		19
(-2) 		72.5
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178284_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1306
Sequence Type Exemplar sequence
Representative Public ID M01E5.6 NCBI
Target Description M01E5.6 /REP_DB=WormBase Gene ID /WP=CE12286 /TR=O17968 /GB=CAB03290.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060938 NCBI Caenorhabditis elegans M01E5.6 (M01E5.6) mRNA, complete cds. 11/11 None
M01E5.6 ENSEMBL cdna:known chromosome:CEL140:I:13306348:13308834:-1 gene:M01E5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13306350-13308751(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E5.6
Entrez Gene 173196 Entrez gene
SwissProt O17968 EMBL-EBI
WormBase CE12286 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3712 transcription cofactor activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03290 Hypothetical protein M01E5.6 [Caenorhabditis elegans] emb|CAB07643.1| Hypothetical protein M01E5.6 [Caenorhabditis elegans] ref|NP_493339.1| M01E5.6 [Caenorhabditis elegans] 0.0
blast CAB03286 Hypothetical protein T04D3.2 [Caenorhabditis elegans] ref|NP_493341.1| T04D3.2 [Caenorhabditis elegans] 4.0E-50
blast CAB03104 Hypothetical protein F44F1.4 [Caenorhabditis elegans] ref|NP_493331.1| F44F1.4 [Caenorhabditis elegans] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 1.4E-43
Sequence
Target Sequence 
>C. ELEGANS:178284_S_AT
gtcacctatgagccggatgttgcagcaatggacaagaagaaaaagcggagagagctcaag
agtcggctgaacaaaattaatgctcaaattgacgagttggagaaacgaagaatggaaaga
gccggaaagaaacaagtcgtctcaagctcagtgccttcggaagaagctgctcaagttgaa
gcacctgcttcacctgctctggccgagaacactaatcaaatctcaaacgaagaaacacct
aaaattgatatatttgaagggtacaatggttctttcttgttcgggacaaacacatcaaag
gaatggatcgttgaagacatccgaaatcacatggttggaaaattgttgaaagcgttctgg
ccaagaatccagaatgtagaagagatgaatggtgaactgtttaaaaagttgatcgccaat
gccagaaaatgtgaaacggagattttggaagcatcgaatgaccgagatgaatactatcgt
ttgatgcaattaacagttgaccagattctcaagaaaactttaaaaaaagaccaacgagcc
actgaacata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACCTATGAGCCGGATGTTGCAG 528 463 1513 Antisense
GAGAGCTCAAGAGTCGGCTGAACAA 194 395 1562 Antisense
AAACAAGTCGTCTCAAGCTCAGTGC 468 129 1642 Antisense
AGCTCAGTGCCTTCGGAAGAAGCTG 38 81 1657 Antisense
AGTTGAAGCACCTGCTTCACCTGCT 537 63 1686 Antisense
CTGCTCTGGCCGAGAACACTAATCA 542 235 1706 Antisense
CAATGGTTCTTTCTTGTTCGGGACA 687 181 1776 Antisense
GAAGACATCCGAAATCACATGGTTG 678 339 1825 Antisense
TGAAAGCGTTCTGGCCAAGAATCCA 327 573 1859 Antisense
AAAAGTTGATCGCCAATGCCAGAAA 230 133 1916 Antisense
AAAGACCAACGAGCCACTGAACATA 248 115 2038 Antisense
Sequence Source Affymetrix Proprietary Database