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[178283_at]

Description M04C9.3 /REP_DB=WormBase Gene ID /WP=CE12404 /TR=P90933 /GB=CAB06022.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 52      6grp_total > 41      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 338
(0)
P 		547
(3)
P 		521.8
(2.6)
P 		126.2
(-3)
P 		421
B 363.7
(-0.2)
P 		587.7
(3)
P 		587.9
(3)
P 		163.4
(-3)
P 		425
C 434.7
(0.9)
P 		595.8
(3)
P 		584.6
(2.9)
P 		140.7
(-3)
P 		455
avr 378.8
(0.3) 		576.8
(3) 		564.8
(2.8) 		143.4
(-3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 928
1 2 3 4 5 6 range
A 453.3
(-1.3)
P 		609.4
(-0.3)
P 		1092.3
(3)
P 		621.5
(-0.2)
P 		311
(-2.3)
P 		201
(-3)
P 		891
B 524.3
(-1.3)
P 		632.5
(-0.5)
P 		1129.1
(3)
P 		563.5
(-1)
P 		393.7
(-2.2)
P 		286.4
(-3)
P 		843
C 485.2
(-0.1)
P 		610.7
(1.9)
P 		672.8
(2.9)
P 		681
(3)
P 		324.5
(-2.7)
P 		308
(-3)
P 		373
avr 487.6
(-1.1) 		617.5
(0) 		964.7
(3) 		622
(0.1) 		343.1
(-2.3) 		265.1
(-3) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 123.1
(2.3)
P 		118.7
(2.1)
P 		136.4
(3)
P 		18.5
(-3)
P 		118
B 116
(1.4)
P 		145.1
(3)
P 		136.2
(2.5)
P 		34.8
(-3)
P 		110
C 143.9
(1)
P 		171.3
(1.9)
P 		203.8
(3)
P 		23.7
(-3)
P 		180
avr 127.7
(1.6) 		145
(2.4) 		158.8
(3) 		25.7
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 83.6
(-1.9)
P 		216.7
(2.3)
P 		237.9
(3)
P 		157.6
(0.5)
P 		93.9
(-1.6)
P 		48.9
(-3)
P 		189
B 182.4
(-0.3)
P 		210.5
(0.7)
P 		274.2
(3)
P 		149.3
(-1.5)
P 		159.9
(-1.1)
P 		106.8
(-3)
P 		167
C 179.9
(2.5)
P 		186.3
(3)
P 		171.2
(1.9)
P 		136.9
(-0.6)
P 		105
(-2.9)
P 		103.1
(-3)
P 		83
avr 148.6
(-0.4) 		204.5
(2) 		227.8
(3) 		147.9
(-0.4) 		119.6
(-1.6) 		86.3
(-3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2118
Sequence Type Exemplar sequence
Representative Public ID M04C9.3 NCBI
Target Description M04C9.3 /REP_DB=WormBase Gene ID /WP=CE12404 /TR=P90933 /GB=CAB06022.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060090(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060090 NCBI Caenorhabditis elegans M04C9.3 (M04C9.3) mRNA, complete cds. 9/11 None
M04C9.3 ENSEMBL cdna:known chromosome:CEL140:I:9361021:9362664:-1 gene:M04C9.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035491 8/11 Cross Hyb Matching Probes None
SNAP00000035487 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9361016-9362559(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M04C9.3
Entrez Gene 187440 Entrez gene
SwissProt P90933 EMBL-EBI
WormBase CE37135 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22928.1.S1_AT similar to Pyroglutamyl-peptidase I (Pyrrolidone-carboxylate peptidase) (5-oxoprolyl-peptidase) (PGP-I) cfa
DROSOPHILA_2:1632593_AT dm
HG-U133_PLUS_2:219891_AT pyroglutamyl-peptidase I hs
HG-U133A:219891_AT pyroglutamyl-peptidase I hs
HG-U133A_2:219891_AT pyroglutamyl-peptidase I hs
U133_X3P:G8923197_3P_AT pyroglutamyl-peptidase I hs
U133_X3P:HS2.131776.2.S1_3P_S_AT pyroglutamyl-peptidase I hs
HG-U133_PLUS_2:1555165_A_AT pyroglutamyl-peptidase I hs
HG-U95E:76689_AT pyroglutamyl-peptidase I hs
MG-U74BV2:108981_AT pyroglutamyl-peptidase I mm
MOE430A:1418329_AT pyroglutamyl-peptidase I mm
MOUSE430A_2:1418329_AT pyroglutamyl-peptidase I mm
MOUSE430_2:1418329_AT pyroglutamyl-peptidase I mm
MOE430B:1460001_AT pyroglutamyl-peptidase I mm
MOUSE430_2:1460001_AT pyroglutamyl-peptidase I mm
MU19KSUBA:TC18086_AT Pyroglutamyl-peptidase I (Pgpep1), mRNA mm
MU19KSUBA:TC18086_G_AT Pyroglutamyl-peptidase I (Pgpep1), mRNA mm
MU19KSUBA:TC18552_S_AT Pyroglutamyl-peptidase I (Pgpep1), mRNA mm
MU19KSUBB:TC25968_AT Pyroglutamyl-peptidase I (Pgpep1), mRNA mm
MU19KSUBC:TC36565_AT Pyroglutamyl-peptidase I (Pgpep1), mRNA mm
RG-U34B:RC_AA965031_AT pyroglutamyl-peptidase I rn
RAE230A:1375215_X_AT pyroglutamyl-peptidase I rn
RAT230_2:1375215_X_AT pyroglutamyl-peptidase I rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4219 pyroglutamyl-peptidase I activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB06022 Hypothetical protein M04C9.3 [Caenorhabditis elegans] ref|NP_492491.2| M04C9.3 [Caenorhabditis elegans] 1.0E-120
blast CAE74446 Hypothetical protein CBG22181 [Caenorhabditis briggsae] 4.0E-66
blast CAE72320 Hypothetical protein CBG19464 [Caenorhabditis briggsae] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR000816 EMBL-EBI Peptidase C15, pyroglutamyl peptidase I 6.1E-5
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 6.2E-28
Sequence
Target Sequence 
>C. ELEGANS:178283_AT
gaatgtttttatttgctgtgctcagttataacaattttgaaagtggaccaaaaaaagtgt
ttctatgatttttatattataaagatgtattcatttttttctttcaaagattgcggagga
gttgacctagagcttcacaagattacagttgcttatgaggatgtaagcaagaaagttccg
gagctgtggaatgagcataaaccggatttggtaatccaccttggtgctcatccagttgag
aagactattaaattcgagcaacaagcattctcgaatggttactgtagtaatgatgtaaac
ggatgtactccagctgataataagacttcatgttcgagtgaacacgagactctggtttca
tgtattaattgtgattttttggtaaccaaagttactgagaaatgtgcattggatggacag
aaatacagtggattatgtgtcaaaaagtctgaagatcccggaagatatctctgcggtttc
tcgtatttcctctctcttcatgaagactgctcaaagtcactttttatccatgttccagct
tttaaagaagaatgcacaaaagaagctgtgaccgaggttattcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTTTTTATTTGCTGTGCTCAG 450 331 220 Antisense
GAGGAGTTGACCTAGAGCTTCACAA 379 403 335 Antisense
GATTTGGTAATCCACCTTGGTGCTC 642 427 424 Antisense
CCACCTTGGTGCTCATCCAGTTGAG 285 273 435 Antisense
GCATTCTCGAATGGTTACTGTAGTA 548 307 484 Antisense
GTAAACGGATGTACTCCAGCTGATA 567 461 514 Antisense
AACACGAGACTCTGGTTTCATGTAT 577 135 560 Antisense
CGGAAGATATCTCTGCGGTTTCTCG 311 241 678 Antisense
TATTTCCTCTCTCTTCATGAAGACT 502 661 703 Antisense
AGTCACTTTTTATCCATGTTCCAGC 376 59 734 Antisense
AGCTGTGACCGAGGTTATTCGAGAA 679 79 783 Antisense
Sequence Source Affymetrix Proprietary Database