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[178281_at]

Description C38D9.9 /REP_DB=WormBase Gene ID /WP=CE24837 /TR=Q9U3N0 /GB=CAB63438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 21      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 44.9
(-2.1)
P 		64.2
(1)
P 		39.2
(-3)
A 		76.3
(3)
P 		37
B 64
(1)
P 		84.3
(3)
P 		22.4
(-3)
A 		52.7
(-0.1)
P 		62
C 55.4
(3)
P 		41
(-3)
A 		43.5
(-2)
P 		48
(-0.1)
M 		14
avr 54.8
(1.2) 		63.2
(3) 		35
(-3) 		59
(2.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 42.2
(1.7)
A 		47
(2.5)
P 		17.3
(-2.6)
A 		15.1
(-3)
A 		49.8
(3)
A 		24.2
(-1.4)
A 		35
B 42
(3)
A 		34.1
(1.6)
P 		38.9
(2.4)
A 		25.4
(0)
A 		22.4
(-0.5)
P 		8.3
(-3)
A 		34
C 15.5
(-3)
A 		58.6
(1.5)
P 		68.5
(2.5)
P 		73
(3)
P 		36.5
(-0.8)
A 		23.1
(-2.2)
A 		58
avr 33.2
(0.1) 		46.6
(3) 		41.6
(1.9) 		37.8
(1.1) 		36.2
(0.8) 		18.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.4
(3)
P 		13.9
(0.5)
P 		10.3
(-3)
A 		11.2
(-2.1)
P 		6
B 20.4
(2.8)
P 		20.8
(3)
P 		5.2
(-3)
A 		11.2
(-0.7)
P 		16
C 18.3
(3)
P 		11.8
(-0.8)
A 		15.2
(1.2)
P 		8.1
(-3)
M 		10
avr 18.4
(3) 		15.5
(0.9) 		10.2
(-3) 		10.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.8
(-1.1)
A 		16.7
(3)
P 		3.8
(-3)
A 		3.8
(-3)
A 		15
(2.2)
A 		5.9
(-2)
A 		13
B 14.6
(3)
A 		11.3
(1.3)
P 		9.5
(0.3)
A 		6.7
(-1.1)
A 		9.1
(0.1)
P 		3.1
(-3)
A 		12
C 5.7
(-3)
A 		17.9
(3)
P 		17.4
(2.8)
P 		14.7
(1.4)
P 		11.8
(0)
A 		7.7
(-2)
A 		12
avr 9.4
(-0.6) 		15.3
(3) 		10.2
(-0.2) 		8.4
(-1.3) 		12
(1) 		5.6
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12607
Sequence Type Exemplar sequence
Representative Public ID C38D9.9 NCBI
Target Description C38D9.9 /REP_DB=WormBase Gene ID /WP=CE24837 /TR=Q9U3N0 /GB=CAB63438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075044 NCBI Caenorhabditis elegans C38D9.9 (C38D9.9) mRNA, complete cds. 11/11 None
SNAP00000039584 ENSEMBL cdna:SNAP chromosome:CEL140:V:17551526:17556403:1 9/11 None
GENEFINDER00000039603 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17551526:17553772:1 11/11 None
C38D9.9 ENSEMBL cdna:known chromosome:CEL140:V:17549959:17553772:1 gene:C38D9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027114 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17549958-17553772(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38D9.9
Entrez Gene 183320 Entrez gene
SwissProt Q9U3N0 EMBL-EBI
WormBase CE24837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63438 Hypothetical protein C38D9.9 [Caenorhabditis elegans] ref|NP_507445.1| C38D9.9 [Caenorhabditis elegans] 0.0
blast CAB07201 Hypothetical protein F31E9.3 [Caenorhabditis elegans] ref|NP_507385.1| F31E9.3 [Caenorhabditis elegans] 1.0E-110
blast CAB63438 Hypothetical protein C38D9.9 [Caenorhabditis elegans] ref|NP_507445.1| C38D9.9 [Caenorhabditis elegans] 1.0E-107
blast CAB07201 Hypothetical protein F31E9.3 [Caenorhabditis elegans] ref|NP_507385.1| F31E9.3 [Caenorhabditis elegans] 6.0E-68
blast CAB07201 Hypothetical protein F31E9.3 [Caenorhabditis elegans] ref|NP_507385.1| F31E9.3 [Caenorhabditis elegans] 3.0E-42
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-23
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.8E-12
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.6E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-23
Sequence
Target Sequence 
>C. ELEGANS:178281_AT
gtgacatgacactgttcctgagaaattcaaagtgccgactggactggttgtcagttccac
gggctttcaaccaaagttctgaaactataactagacttttctccgaccaactcaccaatc
tacatgtcaaaaagctcattctacgggaattcacaagtacccagattgctcagattcttc
caagtttcaaggcaggcgtcttggaagagatcctctgggaactacacgatccagtaaata
ttgatgttgtacaagaagatcttgtcgggttggagcaatggaaaagagcaaagagcttga
tagttaagccaagttatttcaaaaaatcttacgtgcatgtcacaacggattttcaacttt
ttgctaacttctcgaaacttaaagcttacctgaaattttttagagaggaccatgctcgag
acttgaaagagattctaccaaaaatcccaaattttaaatcttggactctcacagctccca
tagaagatcccatggaggtggtgaagattttcaggccggaatatgcgggaggcccgttta
gaagcatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACATGACACTGTTCCTGAGAAA 707 481 1376 Antisense
AATTCAAAGTGCCGACTGGACTGGT 510 155 1399 Antisense
CTGGACTGGTTGTCAGTTCCACGGG 324 241 1414 Antisense
TCCACGGGCTTTCAACCAAAGTTCT 292 1 1431 Antisense
TATAACTAGACTTTTCTCCGACCAA 558 655 1461 Antisense
ACCAACTCACCAATCTACATGTCAA 189 85 1481 Antisense
GTACCCAGATTGCTCAGATTCTTCC 94 459 1532 Antisense
TTCCAAGTTTCAAGGCAGGCGTCTT 602 687 1553 Antisense
AAGAAGATCTTGTCGGGTTGGAGCA 307 151 1628 Antisense
TTTAAATCTTGGACTCTCACAGCTC 668 671 1828 Antisense
GCGGGAGGCCCGTTTAGAAGCATAG 532 261 1900 Antisense
Sequence Source Affymetrix Proprietary Database