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[178280_s_at]

Description T11G6.5 /REP_DB=WormBase Gene ID /WP=CE18954 /TR=Q22411 /GB=CAA93420.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 10      6grp_total > 40      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 125.3
(0.5)
P 		56.9
(-2.7)
A 		49.4
(-3)
A 		179.5
(3)
P 		130
B 147.5
(3)
P 		70.7
(-1.7)
P 		49.9
(-3)
P 		117.6
(1.2)
P 		98
C 109.7
(1.8)
P 		60.3
(-2.6)
P 		55.3
(-3)
A 		123.6
(3)
P 		68
avr 127.5
(2.1) 		62.6
(-2.2) 		51.5
(-3) 		140.2
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 106.7
(2)
P 		118.7
(3)
P 		80
(-0.1)
P 		77.5
(-0.3)
A 		44.9
(-3)
M 		83.2
(0.1)
P 		74
B 92.2
(1.7)
P 		100.4
(2.7)
P 		59.7
(-2.6)
P 		56.3
(-3)
A 		79.6
(0)
P 		102.6
(3)
P 		46
C 69.9
(-1.7)
M 		87.6
(-0.8)
P 		110.4
(0.5)
M 		156.8
(3)
M 		46.9
(-3)
P 		66
(-2)
P 		110
avr 89.6
(1.3) 		102.2
(3) 		83.4
(0.5) 		96.9
(2.3) 		57.1
(-3) 		83.9
(0.6) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 45.6
(3)
P 		12.3
(-3)
A 		12.9
(-2.9)
A 		26.3
(-0.5)
P 		33
B 47
(3)
P 		17.5
(-2)
P 		11.6
(-3)
P 		25.1
(-0.7)
P 		35
C 36.3
(3)
P 		17.3
(-3)
P 		19.3
(-2.4)
A 		20.8
(-1.9)
P 		19
avr 43
(3) 		15.7
(-2.8) 		14.6
(-3) 		24.1
(-1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 19.7
(-1.7)
P 		42.2
(3)
P 		17.4
(-2.2)
P 		19.7
(-1.7)
A 		13.6
(-3)
M 		20.3
(-1.6)
P 		29
B 32.1
(1.4)
P 		33.4
(1.8)
P 		14.5
(-3)
P 		14.9
(-2.9)
A 		32.3
(1.5)
P 		38.3
(3)
P 		24
C 25.9
(0.9)
M 		26.7
(1.2)
P 		28.1
(1.7)
M 		31.5
(3)
M 		15.2
(-3)
P 		22.1
(-0.5)
P 		16
avr 25.9
(-0.5) 		34.1
(3) 		20
(-3) 		22
(-2.1) 		20.4
(-2.8) 		26.9
(-0.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178280_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8686
Sequence Type Exemplar sequence
Representative Public ID T11G6.5 NCBI
Target Description T11G6.5 /REP_DB=WormBase Gene ID /WP=CE18954 /TR=Q22411 /GB=CAA93420.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069607
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T11G6.5 ENSEMBL cdna:known chromosome:CEL140:IV:10835810:10842727:-1 gene:T11G6.5 A 
NM_069607 NCBI Caenorhabditis elegans T11G6.5 (T11G6.5) mRNA, complete cds. A 
SNAP00000000762 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10836254:10842717:-1 None
GENEFINDER00000000775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10836254:10842717:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10836092-10842723(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11G6.5
Entrez Gene 177976 Entrez gene
SwissProt Q22411 EMBL-EBI
WormBase CE32932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 0.0
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 5.0E-40
blast AAK39355 Hypothetical protein Y73B3A.10 [Caenorhabditis elegans] ref|NP_508062.2| Y73B3A.10 [Caenorhabditis elegans] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:178280_S_AT
gaactgaattcattgttcactgaaatgcacaacctgaagaaattaatgaagcccaactgg
ccacgtgtccaatcaactatttatcttcacaatatggcttttgagaatatgaagaacatt
aagaacaagagcatgcacaagtacttccaaacttttaatgattttatcagatgtcatcca
ccattggtcgaggtactaccacttcatttttgtgacagaggcgccacaggctcgggtctg
gcgaattgcattgcaggagtcactaagcatgttggcgcaaaacacgctattttcttgacc
caaagtaggccattttttgaacgatttttgcctctaatattaactttttcagatcacaaa
ccagagtctgctatagttcaatgcatgctagaatgcgaagtaaaagtgatgtcgattcga
ctacttgctcagtttcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGAATTCATTGTTCACTGAAA 190 349 3811 Antisense
GTTCACTGAAATGCACAACCTGAAG 447 443 3825 Antisense
TAATGAAGCCCAACTGGCCACGTGT 256 637 3854 Antisense
TGGCCACGTGTCCAATCAACTATTT 73 545 3868 Antisense
GTCCAATCAACTATTTATCTTCACA 166 477 3877 Antisense
TTTTCTTGACCCAAAGTAGGCCATT 625 669 4100 Antisense
GCCATTTTTTGAACGATTTTTGCCT 116 281 4119 Antisense
GATTTTTGCCTCTAATATTAACTTT 329 429 4133 Antisense
AACTTTTTCAGATCACAAACCAGAG 595 137 4152 Antisense
ATGTCGATTCGACTACTTGCTCAGT 12 49 4219 Antisense
TCGACTACTTGCTCAGTTTCTTGAA 619 601 4227 Antisense
Sequence Source Affymetrix Proprietary Database