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[178279_at]

Description C47F8.5 /REP_DB=WormBase Gene ID /WP=CE17574 /TR=O62114 /GB=CAA15838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 3.1
(-3)
A 		15.5
(-2.3)
A 		5.1
(-2.9)
A 		106.6
(3)
A 		104
B 6.4
(-0.3)
A 		7.3
(0.9)
A 		4.3
(-3)
A 		8.9
(3)
A 		5
C 24.2
(2.9)
A 		4.8
(-3)
A 		24.6
(3)
A 		12.6
(-0.6)
A 		20
avr 11.2
(-2.6) 		9.2
(-3) 		11.3
(-2.6) 		42.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 42.8
(2.3)
A 		48.3
(3)
A 		32.5
(0.9)
A 		3.3
(-3)
A 		7.7
(-2.4)
A 		7.8
(-2.4)
A 		45
B 5.3
(-1.9)
A 		16.7
(3)
A 		9.1
(-0.2)
A 		5.8
(-1.6)
A 		10.6
(0.4)
A 		2.6
(-3)
A 		14
C 37.8
(1.4)
A 		6
(-2.9)
A 		49.5
(3)
A 		11.7
(-2.1)
A 		31
(0.5)
A 		5
(-3)
A 		45
avr 28.6
(2.6) 		23.7
(1.4) 		30.4
(3) 		6.9
(-2.6) 		16.4
(-0.3) 		5.1
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.1
(-3)
A 		3.4
(-2)
A 		1.3
(-2.9)
A 		15.6
(3)
A 		15
B 2
(3)
A 		1.8
(1.8)
A 		1
(-3)
A 		1.9
(2.4)
A 		1
C 8
(2.5)
A 		1.4
(-3)
A 		8.6
(3)
A 		2.1
(-2.4)
A 		7
avr 3.7
(-0.9) 		2.2
(-3) 		3.6
(-1) 		6.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.9
(-0.4)
A 		17.2
(3)
A 		7.1
(-0.7)
A 		0.8
(-3)
A 		2.3
(-2.5)
A 		1.9
(-2.6)
A 		16
B 1.8
(-2)
A 		5.6
(3)
A 		2.2
(-1.4)
A 		1.5
(-2.3)
A 		4.3
(1.3)
A 		1
(-3)
A 		5
C 14
(3)
A 		1.8
(-3)
A 		12.6
(2.3)
A 		2.3
(-2.7)
A 		10
(1)
A 		1.7
(-3)
A 		12
avr 7.9
(2.7) 		8.2
(3) 		7.3
(2.2) 		1.5
(-3) 		5.5
(0.6) 		1.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.750
Sequence Type Exemplar sequence
Representative Public ID C47F8.5 NCBI
Target Description C47F8.5 /REP_DB=WormBase Gene ID /WP=CE17574 /TR=O62114 /GB=CAA15838.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060715 NCBI Caenorhabditis elegans C47F8.5 (C47F8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000020217 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12327472:12332184:1 11/11 None
SNAP00000020211 ENSEMBL cdna:SNAP chromosome:CEL140:I:12330373:12332184:1 9/11 None
C47F8.5 ENSEMBL cdna:known chromosome:CEL140:I:12330059:12332184:1 gene:C47F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12330149-12332115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47F8.5
Entrez Gene 183561 Entrez gene
SwissProt O62114 EMBL-EBI
WormBase CE34165 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 0.0
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 0.0
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 1.0E-173
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 1.0E-163
blast CAB04032 Hypothetical protein E03H4.11 [Caenorhabditis elegans] ref|NP_493153.1| E03H4.11 [Caenorhabditis elegans] 1.0E-138
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 1.0E-103
blast CAA15841 Hypothetical protein C47F8.3 [Caenorhabditis elegans] emb|CAB04502.1| Hypothetical protein C47F8.3 [Caenorhabditis elegans] ref|NP_493113.1| C47F8.3 [Caenorhabditis elegans] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.6E-114
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 5.0E-108
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.2E-100
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.6E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493116.2 1 10-29
C47F8.5 1 10-29
Sequence
Target Sequence 
>C. ELEGANS:178279_AT
tgatgatttgccgtttaagtccctctccctgctgctctacgcagtgagcaaggctccaga
gttcaaagttattgggaaaatcgatgaagatgtcatgttcttccccgacaagctaatccc
attgctcgatggaaaagttatcgatccggatgccgcggccttctacgggcagctcctgaa
agagggggaacccgttattaagaaaaaggatgctcactggtacgtacccgattacgcgta
caactgcacaggatacccagcatacgtcgccggcccattctacctggctactaggaaagc
cgccaagctggtgctgaaattcacaaagtttcagaattttatgacggttgaggactccct
tatcaccggaattctagccaatgacctagggataccgaggaaaaatttggagcatgtgta
caggcatgattatgatatccaagataacgaggggaaggagattttggcgtggcattcctt
taaaaataatattccatatcgaaatttttttgtgaagcgagttgcaaggcatcgctacga
gca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGATTTGCCGTTTAAGTCCCTC 36 565 432 Antisense
TCCCTGCTGCTCTACGCAGTGAGCA 500 597 457 Antisense
CCCGACAAGCTAATCCCATTGCTCG 300 261 535 Antisense
AAAAGTTATCGATCCGGATGCCGCG 382 129 564 Antisense
CCTTCTACGGGCAGCTCCTGAAAGA 546 265 590 Antisense
AAAGGATGCTCACTGGTACGTACCC 146 121 636 Antisense
GATTACGCGTACAACTGCACAGGAT 203 431 661 Antisense
AAAGCCGCCAAGCTGGTGCTGAAAT 144 123 727 Antisense
TGACGGTTGAGGACTCCCTTATCAC 120 571 773 Antisense
GAGATTTTGGCGTGGCATTCCTTTA 445 395 889 Antisense
GAGTTGCAAGGCATCGCTACGAGCA 697 397 950 Antisense
Sequence Source Affymetrix Proprietary Database