[Home] | [Total List]

[178277_at]

Description C34F6.6 /REP_DB=WormBase Gene ID /WP=CE15675 /TR=O17640 /GB=CAB03940.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 83      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_total > 74      4grp_total > 32      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 58.9
(-3)
P 		89.8
(-0.4)
P 		131.6
(3)
P 		102.2
(0.6)
P 		73
B 94.3
(-1.4)
P 		80.9
(-3)
P 		106
(-0.1)
P 		132
(3)
P 		51
C 82.3
(-3)
P 		136.6
(3)
P 		120
(1.2)
P 		104.6
(-0.5)
P 		54
avr 78.5
(-3) 		102.4
(0.5) 		119.2
(3) 		112.9
(2.1) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 60.1
(-3)
A 		69.3
(-2.2)
P 		109.9
(1.3)
P 		129.9
(3)
P 		117.7
(2)
P 		97
(0.2)
P 		70
B 89.3
(-2.5)
P 		92.9
(-2)
P 		128.1
(2.7)
P 		85.4
(-3)
P 		111.9
(0.5)
P 		130.4
(3)
P 		45
C 92.2
(-2)
P 		75.6
(-3)
P 		120.4
(-0.3)
P 		176
(3)
P 		101.9
(-1.4)
P 		152
(1.6)
P 		100
avr 80.5
(-2.9) 		79.3
(-3) 		119.5
(1.7) 		130.4
(3) 		110.5
(0.7) 		126.5
(2.5) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 21.4
(-1)
P 		19.5
(-1.6)
P 		34.4
(3)
P 		15
(-3)
P 		19
B 30.1
(3)
P 		20
(-3)
P 		24.6
(-0.3)
P 		28.1
(1.8)
P 		10
C 27.2
(-0.6)
P 		39.3
(2.4)
P 		41.8
(3)
P 		17.6
(-3)
P 		24
avr 26.2
(-0.3) 		26.3
(-0.3) 		33.6
(3) 		20.2
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.1
(-3)
A 		24.7
(0.3)
P 		23.9
(0.1)
P 		33
(2.4)
P 		35.5
(3)
P 		23.6
(0.1)
P 		24
B 31.1
(-1)
P 		30.9
(-1.1)
P 		31.1
(-1)
P 		22.6
(-3)
P 		45.5
(2.3)
P 		48.6
(3)
P 		26
C 34.2
(-0.6)
P 		23.1
(-3)
P 		30.6
(-1.4)
P 		35.4
(-0.3)
P 		33
(-0.9)
P 		50.9
(3)
P 		28
avr 25.5
(-3) 		26.2
(-2.7) 		28.5
(-1.8) 		30.3
(-1.1) 		38
(1.8) 		41
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17116
Sequence Type Exemplar sequence
Representative Public ID C34F6.6 NCBI
Target Description C34F6.6 /REP_DB=WormBase Gene ID /WP=CE15675 /TR=O17640 /GB=CAB03940.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077471 NCBI Caenorhabditis elegans C34F6.6 (C34F6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000004412 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11207365:11208795:-1 10/11 None
C34F6.6 ENSEMBL cdna:known chromosome:CEL140:X:11207411:11208047:-1 gene:C34F6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11207410-11208047(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34F6.6
Entrez Gene 183216 Entrez gene
SwissProt O17640 EMBL-EBI
WormBase CE15675 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03940 Hypothetical protein C34F6.6 [Caenorhabditis elegans] ref|NP_509872.1| C34F6.6 [Caenorhabditis elegans] 6.0E-75
blast CAB03940 Hypothetical protein C34F6.6 [Caenorhabditis elegans] ref|NP_509872.1| C34F6.6 [Caenorhabditis elegans] 1.0E-65
blast CAB03939 Hypothetical protein C34F6.5 [Caenorhabditis elegans] ref|NP_509873.1| C34F6.5 [Caenorhabditis elegans] 3.0E-45
blast CAE70682 Hypothetical protein CBG17399 [Caenorhabditis briggsae] 5.0E-28
blast CAE70682 Hypothetical protein CBG17399 [Caenorhabditis briggsae] 9.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178277_AT
atgcatttttcagttctttccgatagatccgatggcaatatagaagaaattcgtgagcac
gcaaagaataagttcgaagaacttgttaagagcacaggagaaatgcttgagccagaaatc
ccagtaaaagaaccatgtggcacgtcgaaaatcaaacgtgatttgaagaggatgtcaaaa
catttgaaatttttcaacgaacttttcataaaattcgtctcggaatttgatggttcaccg
gtgcgtctcaacaaattgcgaagagctacaggtttcatcaaaggaatattggttttggag
aatatttcagtctttaatatcccacaaacctcgacacctggaaattatgccaaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATTTTTCAGTTCTTTCCGATA 615 43 13 Antisense
GTTCTTTCCGATAGATCCGATGGCA 525 443 25 Antisense
AATGCTTGAGCCAGAAATCCCAGTA 402 163 114 Antisense
GAAATCCCAGTAAAAGAACCATGTG 57 361 127 Antisense
GAACCATGTGGCACGTCGAAAATCA 230 345 142 Antisense
GAATTTGATGGTTCACCGGTGCGTC 501 323 235 Antisense
CACCGGTGCGTCTCAACAAATTGCG 483 201 248 Antisense
TGCGAAGAGCTACAGGTTTCATCAA 256 549 269 Antisense
ATTTCAGTCTTTAATATCCCACAAA 26 17 316 Antisense
CACAAACCTCGACACCTGGAAATTA 81 189 335 Antisense
GACACCTGGAAATTATGCCAAAGAC 38 369 345 Antisense
Sequence Source Affymetrix Proprietary Database