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[178276_at]

Description C07H4.1 /REP_DB=WormBase Gene ID /WP=CE02986 /TR=Q17803 /GB=CAA92727.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 97      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 87      6grp_total > 96      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3050
1 2 3 4 range
A 1010
(-1.8)
P 		550.7
(-3)
P 		803.6
(-2.4)
P 		2891.3
(3)
P 		2341
B 939.4
(-2.3)
P 		764.1
(-2.7)
P 		603.9
(-3)
P 		3600.3
(3)
P 		2996
C 1009.6
(-2.3)
P 		751.9
(-3)
P 		827.1
(-2.8)
P 		2951
(3)
P 		2199
avr 986.3
(-2.3) 		688.9
(-3) 		744.9
(-2.9) 		3147.5
(3) 		2459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 1064.4
(-1)
P 		934.8
(-3)
P 		989.1
(-2.2)
P 		1045.3
(-1.3)
P 		1318.3
(3)
P 		1018.9
(-1.7)
P 		384
B 1188.1
(0.1)
P 		1413
(2)
P 		812.4
(-3)
P 		1305.6
(1.1)
P 		1220
(0.4)
P 		1536
(3)
P 		724
C 946.6
(-1.9)
P 		996.1
(-1.5)
P 		811.8
(-3)
P 		1385.6
(1.8)
P 		1012.1
(-1.3)
P 		1526.4
(3)
P 		715
avr 1066.4
(-0.6) 		1114.6
(-0) 		871.1
(-3) 		1245.5
(1.6) 		1183.5
(0.8) 		1360.4
(3) 		489
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 648
1 2 3 4 range
A 367.7
(1.9)
P 		119.5
(-3)
P 		210.1
(-1.2)
P 		423.2
(3)
P 		304
B 299.6
(-1.5)
P 		188.7
(-2.5)
P 		139.9
(-3)
P 		767.2
(3)
P 		627
C 334.2
(-0.5)
P 		216.2
(-3)
P 		288.3
(-1.5)
P 		497.6
(3)
P 		281
avr 333.8
(-0.5) 		174.8
(-3) 		212.8
(-2.4) 		562.7
(3) 		388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 196.2
(-3)
P 		332.5
(1.1)
P 		215.4
(-2.4)
P 		265.1
(-0.9)
P 		397.8
(3)
P 		248.1
(-1.5)
P 		202
B 413.4
(0.5)
P 		470.3
(1.4)
P 		197.3
(-3)
P 		345.8
(-0.6)
P 		495.7
(1.8)
P 		572.8
(3)
P 		376
C 350.9
(-0.2)
P 		304
(-1.1)
P 		206.6
(-3)
P 		278.7
(-1.6)
P 		327.5
(-0.6)
P 		511
(3)
P 		304
avr 320.2
(-0.1) 		368.9
(1.1) 		206.4
(-3) 		296.5
(-0.7) 		407
(2.1) 		444
(3) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2822
Sequence Type Exemplar sequence
Representative Public ID C07H4.1 NCBI
Target Description C07H4.1 /REP_DB=WormBase Gene ID /WP=CE02986 /TR=Q17803 /GB=CAA92727.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063538 NCBI Caenorhabditis elegans C07H4.1 (C07H4.1) mRNA, complete cds. 11/11 None
SNAP00000007001 ENSEMBL cdna:SNAP chromosome:CEL140:II:9091114:9092056:-1 11/11 None
GENEFINDER00000007003 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9091114:9092056:-1 11/11 None
C07H4.1 ENSEMBL cdna:known chromosome:CEL140:II:9091114:9092041:-1 gene:C07H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9091110-9092038(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07H4.1
Entrez Gene 174448 Entrez gene
SwissProt Q17803 EMBL-EBI
WormBase CE02986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92727 Hypothetical protein C07H4.1 [Caenorhabditis elegans] ref|NP_495939.1| C07H4.1 [Caenorhabditis elegans] 1.0E-101
blast CAE59799 Hypothetical protein CBG03261 [Caenorhabditis briggsae] 6.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495939.1 4 29-51,61-83,96-118,138-160
C07H4.1 4 29-51,61-83,96-118,138-160
SNAP00000007001 4 34-56,66-88,101-123,143-165
GENEFINDER00000007003 4 34-56,66-88,101-123,143-165
Sequence
Target Sequence 
>C. ELEGANS:178276_AT
ggagttctacttgttttcgcaattgtgcatcaccagaaagcttggagtgttgttttcacc
ggagtcaatttgataatgctcactgctcaagtcgtcattttatgggtaggagttgtcaag
gaggctcacaaatttcttcaaactcatctcgttttcttgtctctatccttcatttgggac
gttgtacttgccatcggattcatctgcttatcagttcttccttacgcatatacaaatgat
atattccaatataaaggagcagaatggaatgcgagattatttgcaattattatgggatcc
cttctacttctctggttcattgctcgtttctttggtacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTCTACTTGTTTTCGCAATTG 678 515 145 Antisense
GAGTGTTGTTTTCACCGGAGTCAAT 196 401 189 Antisense
AATGCTCACTGCTCAAGTCGTCATT 605 165 219 Antisense
GGAGGCTCACAAATTTCTTCAAACT 190 515 264 Antisense
CAAACTCATCTCGTTTTCTTGTCTC 574 191 283 Antisense
TCTTGTCTCTATCCTTCATTTGGGA 11 619 299 Antisense
TTGGGACGTTGTACTTGCCATCGGA 259 701 318 Antisense
TGCCATCGGATTCATCTGCTTATCA 105 587 333 Antisense
ATCAGTTCTTCCTTACGCATATACA 564 29 354 Antisense
TATTATGGGATCCCTTCTACTTCTC 368 661 432 Antisense
TTCATTGCTCGTTTCTTTGGTACTA 684 687 460 Antisense
Sequence Source Affymetrix Proprietary Database