[Home] | [Total List]

[178275_s_at]

Description F47G4.4 /REP_DB=WormBase Gene ID /WP=CE18702 /TR=Q9XTS1 /GB=CAB16313.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 26      4grp_total > 36      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 393
(3)
P 		327.2
(-1.8)
P 		310
(-3)
P 		365.4
(1)
P 		83
B 220
(-3)
P 		405.1
(3)
P 		323.2
(0.3)
P 		398
(2.8)
P 		185
C 478.9
(3)
P 		389.4
(-0)
P 		307.3
(-2.8)
P 		301.3
(-3)
P 		178
avr 364
(2) 		373.9
(3) 		313.5
(-3) 		354.9
(1.1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 422.8
(3)
P 		365.6
(1)
P 		299.9
(-1.2)
P 		249.2
(-3)
P 		334.3
(-0.1)
P 		322.8
(-0.5)
P 		174
B 422.4
(2.6)
P 		440.2
(3)
P 		303.5
(0.1)
P 		156.3
(-3)
P 		209.8
(-1.9)
P 		287.6
(-0.2)
P 		284
C 388.8
(3)
P 		386.1
(2.9)
P 		328.8
(1.4)
P 		168.7
(-3)
P 		313.2
(0.9)
P 		251.2
(-0.8)
P 		220
avr 411.3
(3) 		397.3
(2.6) 		310.7
(0.3) 		191.4
(-3) 		285.8
(-0.4) 		287.2
(-0.4) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 143.1
(3)
P 		71
(-1.8)
P 		81
(-1.2)
P 		53.5
(-3)
P 		90
B 70.2
(-3)
P 		100
(3)
P 		74.9
(-2.1)
P 		84.8
(-0.1)
P 		30
C 158.5
(3)
P 		112
(0.4)
P 		107.1
(0.1)
P 		50.8
(-3)
P 		108
avr 123.9
(3) 		94.3
(0.1) 		87.7
(-0.6) 		63
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 77.9
(-1.7)
P 		130
(3)
P 		65.3
(-2.8)
P 		63.2
(-3)
P 		100.9
(0.4)
P 		78.6
(-1.6)
P 		67
B 147
(3)
P 		146.5
(3)
P 		73.7
(-1.2)
P 		41.4
(-3)
P 		85.3
(-0.5)
P 		107.2
(0.7)
P 		106
C 144.1
(3)
P 		117.8
(1.6)
P 		83.7
(-0.3)
P 		33.9
(-3)
P 		101.4
(0.7)
P 		84.1
(-0.3)
P 		110
avr 123
(2.4) 		131.4
(3) 		74.2
(-1) 		46.2
(-3) 		95.9
(0.5) 		90
(0.1) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178275_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2537
Sequence Type Exemplar sequence
Representative Public ID F47G4.4 NCBI
Target Description F47G4.4 /REP_DB=WormBase Gene ID /WP=CE18702 /TR=Q9XTS1 /GB=CAB16313.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061052 NCBI Caenorhabditis elegans F47G4.4 (F47G4.4) mRNA, complete cds. 11/11 A 
SNAP00000012293 ENSEMBL cdna:SNAP chromosome:CEL140:I:14071007:14074814:-1 11/11 None
GENEFINDER00000012298 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14071007:14076337:-1 11/11 None
F47G4.4.1 ENSEMBL cdna:known chromosome:CEL140:I:14070867:14076927:-1 gene:F47G4.4 11/11 None
F47G4.4.2 ENSEMBL cdna:known chromosome:CEL140:I:14070873:14076921:-1 gene:F47G4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14070937-14075726(-) 99.49 99.49
Public Domain and Genome References
Gene Title
Ensembl F47G4.4
Entrez Gene 173271 Entrez gene
SwissProt Q9XTS1 EMBL-EBI
WormBase CE18702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16313 Hypothetical protein F47G4.4 [Caenorhabditis elegans] ref|NP_493453.1| F47G4.4 [Caenorhabditis elegans] 0.0
blast CAE71828 Hypothetical protein CBG18869 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Sequence
Target Sequence 
>C. ELEGANS:178275_S_AT
agaattccacgtcatcggtgacctctaccacgtcggccaagacgcctgtaggggtctggg
gagcttgtatagaaactgtacatgacatcgggatagttgcgaagaaggagaatagaaaca
tccgacggctcaagatgcttacctcccgtcgaacgagcaacgtggatatccctccagaag
tgtgctccgatgagcaactagtgttaaccgccacgaggatactgagcaggaggaacgatt
ggtcattgaacagctgtcatgcctaccttccagtcataatagacaacatagccagtgtag
acgttacaaatcgagctatagccctggagggtctcgcagcgatcgctgacaccctggggg
agaggctcgtgaagtttgcgtccatgaactccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATTCCACGTCATCGGTGACCTC 36 75 1622 Antisense
GGCCAAGACGCCTGTAGGGGTCTGG 195 533 1656 Antisense
GAACGAGCAACGTGGATATCCCTCC 115 345 1772 Antisense
GGATATCCCTCCAGAAGTGTGCTCC 109 511 1785 Antisense
GAGCAACTAGTGTTAACCGCCACGA 379 389 1813 Antisense
ACCGCCACGAGGATACTGAGCAGGA 100 89 1828 Antisense
GTCATTGAACAGCTGTCATGCCTAC 279 467 1863 Antisense
ATGCCTACCTTCCAGTCATAATAGA 333 41 1880 Antisense
CTATAGCCCTGGAGGGTCTCGCAGC 613 223 1937 Antisense
TCGCTGACACCCTGGGGGAGAGGCT 672 597 1964 Antisense
TGAAGTTTGCGTCCATGAACTCCCA 435 575 1991 Antisense
Sequence Source Affymetrix Proprietary Database