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[178273_at]

Description F01D5.2 /REP_DB=WormBase Gene ID /WP=CE18560 /TR=Q9XVB0 /GB=CAB04040.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 86.4
(-2.3)
A
281
(3)
M
228.2
(1.6)
P
58.9
(-3)
A
222
B 112.2
(-1.3)
A
177.2
(0.7)
A
254.1
(3)
P
56.6
(-3)
A
198
C 119.7
(-0.7)
A
229.1
(3)
P
217.1
(2.6)
P
49.3
(-3)
A
180
avr 106.1
(-1.3)
229.1
(2.9)
233.1
(3)
54.9
(-3)
178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 28.8
(1.3)
A
38.3
(3)
A
11.7
(-1.9)
A
5.6
(-3)
A
8.3
(-2.5)
A
29.1
(1.3)
A
33
B 11
(-2.6)
A
89.7
(3)
A
6.4
(-2.9)
A
39.8
(-0.5)
A
5.1
(-3)
A
7
(-2.9)
A
85
C 50
(0.9)
A
59.4
(1.8)
A
72.2
(3)
A
9.1
(-3)
A
36
(-0.4)
A
10.1
(-2.9)
A
63
avr 29.9
(-1.2)
62.5
(3)
30.1
(-1.1)
18.2
(-2.6)
16.5
(-2.9)
15.4
(-3)
47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 31.4
(-0.4)
A
61
(3)
M
59.7
(2.9)
P
8.6
(-3)
A
52
B 35.8
(0)
A
43.8
(1.1)
A
58.9
(3)
P
12.1
(-3)
A
47
C 39.6
(-0.2)
A
65.9
(2.1)
P
75.7
(3)
P
8.3
(-3)
A
67
avr 35.6
(-0.2)
56.9
(2.1)
64.8
(3)
9.7
(-3)
55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 5.3
(-1.1)
A
13.6
(3)
A
2.6
(-2.4)
A
1.4
(-3)
A
2.5
(-2.5)
A
7.1
(-0.2)
A
12
B 3.8
(-2.5)
A
29.9
(3)
A
1.5
(-3)
A
10.5
(-1.1)
A
2.1
(-2.9)
A
2.6
(-2.8)
A
28
C 18.5
(3)
A
18.1
(2.9)
A
18.4
(3)
A
1.8
(-3)
A
11.6
(0.5)
A
3.4
(-2.4)
A
17
avr 9.2
(-1.2)
20.5
(3)
7.5
(-1.8)
4.6
(-2.9)
5.4
(-2.6)
4.4
(-3)
16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2966
Sequence Type Exemplar sequence
Representative Public ID F01D5.2 NCBI
Target Description F01D5.2 /REP_DB=WormBase Gene ID /WP=CE18560 /TR=Q9XVB0 /GB=CAB04040.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064532(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_064532 NCBI Caenorhabditis elegans F01D5.2 (F01D5.2) mRNA, complete cds. 11/11 None
F01D5.2 ENSEMBL cdna:known chromosome:CEL140:II:13998389:13998841:-1 gene:F01D5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039840 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039847 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13998385-13998838(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01D5.2
Entrez Gene 184056 Entrez gene
SwissProt Q9XVB0 EMBL-EBI
WormBase CE18560 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4872 receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04040 Hypothetical protein F01D5.2 [Caenorhabditis elegans] ref|NP_496933.1| F01D5.2 [Caenorhabditis elegans] 2.0E-72
blast CAB04036 Hypothetical protein F01D5.3 [Caenorhabditis elegans] ref|NP_496934.1| F01D5.3 [Caenorhabditis elegans] 6.0E-55
blast CAE73378 Hypothetical protein CBG20818 [Caenorhabditis briggsae] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.2E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.2E-13
Sequence
Target Sequence
>C. ELEGANS:178273_AT
atttccctgacagcgtgccaaacttccgatgcaccatgccaagacgacccattagctgac
tgtcatgcctacgccggcctttgcagtaatccaatgtacactagttttttagataaatat
tgcccaaaaacttgtgggctctgcccggattcgactactttagtcccaccaactgcgaat
ccaaattgtgtggatacaaatgtgcattgcaaatcatgggcgaagcagggatactgtact
tcgtgctttttggattgtgccgaaaaaattcaaaattgtgcaaaatcatgtggcttctgc
aacccggaagcctgcttgaactgcaaacagc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATTTCCCTGACAGCGTGCCAAACTT 647 15 49 Antisense
TTCCGATGCACCATGCCAAGACGAC 112 697 72 Antisense
CCAAGACGACCCATTAGCTGACTGT 449 273 87 Antisense
ATTAGCTGACTGTCATGCCTACGCC 397 11 99 Antisense
CCGGCCTTTGCAGTAATCCAATGTA 346 265 122 Antisense
AAAACTTGTGGGCTCTGCCCGGATT 628 129 175 Antisense
TTCGACTACTTTAGTCCCACCAACT 44 685 198 Antisense
TCCCACCAACTGCGAATCCAAATTG 231 597 212 Antisense
GCAGGGATACTGTACTTCGTGCTTT 544 309 273 Antisense
TCGTGCTTTTTGGATTGTGCCGAAA 89 605 289 Antisense
GAAGCCTGCTTGAACTGCAAACAGC 211 345 355 Antisense
Sequence Source Affymetrix Proprietary Database