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[178272_at]

Description E03G2.1 /REP_DB=WormBase Gene ID /WP=CE03118 /TR=Q19051 /GB=CAA92151.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 56
(-1)
A 		121.7
(3)
A 		23.6
(-3)
A 		85.7
(0.8)
A 		98
B 49.5
(-2.8)
A 		119.2
(3)
A 		83.1
(0)
A 		46.9
(-3)
A 		72
C 71.9
(-0.3)
A 		104
(1.6)
A 		26
(-3)
A 		127.3
(3)
A 		101
avr 59.1
(-1.7) 		115
(3) 		44.2
(-3) 		86.6
(0.6) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 124.3
(3)
A 		21.3
(-2.4)
A 		18.4
(-2.5)
A 		26.9
(-2.1)
A 		28.1
(-2)
A 		9.3
(-3)
A 		115
B 48.5
(3)
A 		26.8
(-1.3)
A 		28.2
(-1)
A 		18.2
(-3)
A 		28.6
(-0.9)
A 		25
(-1.7)
A 		30
C 35.5
(0.4)
A 		52.9
(2.6)
A 		9
(-3)
A 		55.7
(3)
A 		31.7
(-0.1)
A 		33.9
(0.2)
A 		47
avr 69.4
(3) 		33.7
(-1.2) 		18.5
(-3) 		33.6
(-1.2) 		29.5
(-1.7) 		22.7
(-2.5) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 20.4
(1.2)
A 		26.4
(3)
A 		6.2
(-3)
A 		12.5
(-1.1)
A 		20
B 15.8
(-1.2)
A 		29.4
(3)
A 		19.3
(-0.1)
A 		10
(-3)
A 		19
C 23.8
(1.2)
A 		29.9
(3)
A 		9.1
(-3)
A 		21.5
(0.6)
A 		21
avr 20
(-0) 		28.6
(3) 		11.5
(-3) 		14.7
(-1.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 22.9
(3)
A 		7.6
(-1.5)
A 		4
(-2.5)
A 		6.8
(-1.7)
A 		8.5
(-1.2)
A 		2.3
(-3)
A 		21
B 16.9
(3)
A 		8.9
(-1)
A 		6.8
(-2)
A 		4.8
(-3)
A 		11.6
(0.4)
A 		9.3
(-0.8)
A 		12
C 13.2
(1.7)
A 		16.1
(3)
A 		2.3
(-3)
A 		11.2
(0.9)
A 		10.3
(0.5)
A 		11.4
(1)
A 		14
avr 17.7
(3) 		10.9
(-0.1) 		4.4
(-3) 		7.6
(-1.6) 		10.1
(-0.4) 		7.7
(-1.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17780
Sequence Type Exemplar sequence
Representative Public ID E03G2.1 NCBI
Target Description E03G2.1 /REP_DB=WormBase Gene ID /WP=CE03118 /TR=Q19051 /GB=CAA92151.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078214 NCBI Caenorhabditis elegans E03G2.1 (E03G2.1) mRNA, complete cds. 11/11 A 
E03G2.1 ENSEMBL cdna:known chromosome:CEL140:X:15926465:15929036:1 gene:E03G2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041425 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041430 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15926464-15929036(+) 88.61 100.0
Public Domain and Genome References
Gene Title
Ensembl E03G2.1
Entrez Gene 184014 Entrez gene
SwissProt Q19051 EMBL-EBI
WormBase CE03118 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92151 Hypothetical protein E03G2.1 [Caenorhabditis elegans] ref|NP_510615.1| E03G2.1 [Caenorhabditis elegans] 1.0E-174
blast CAB04222 Hypothetical protein F31B9.3 [Caenorhabditis elegans] ref|NP_510614.1| F31B9.3 [Caenorhabditis elegans] 7.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510615.1 1 78-100
E03G2.1 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:178272_AT
aattgcgcgagaagttgtcaccataattatggaccaccctacgctgcgaaaaaacagggt
ttttttcaaattttaaattgttgtaaaaaaacaattcaaataaatttaaatatatttgca
ataccacaattggtgattcctatgcctccctcgtattttgtcaaggagtgtatgtctggt
agtatatttggcacgaacatcgccgtcgctaacacagaaatattggcgagggattacgaa
gatacccagcggagaaaatacagagatgtggagttgaagcagaagatgcaaaagagaaaa
caacaaaaccttttggaagctcgagagctcagattggtcaaaaaggctaagatgagtgtg
cggggaatcagaaatatggaggaggcagaagagttcgactcatccctcccaggaccttca
accataaagatgcttaaaactcatagtcagttaagaacaatgctactgcccttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCGCGAGAAGTTGTCACCATA 602 177 373 Antisense
CATAATTATGGACCACCCTACGCTG 690 207 394 Antisense
CACAATTGGTGATTCCTATGCCTCC 123 195 497 Antisense
TGCCTCCCTCGTATTTTGTCAAGGA 213 583 515 Antisense
GTATATTTGGCACGAACATCGCCGT 693 453 554 Antisense
ACATCGCCGTCGCTAACACAGAAAT 500 103 569 Antisense
GGATTACGAAGATACCCAGCGGAGA 355 507 603 Antisense
GCTCGAGAGCTCAGATTGGTCAAAA 220 299 691 Antisense
GGCAGAAGAGTTCGACTCATCCCTC 58 535 756 Antisense
CTCCCAGGACCTTCAACCATAAAGA 527 233 778 Antisense
TAAGAACAATGCTACTGCCCTTGCG 15 639 824 Antisense
Sequence Source Affymetrix Proprietary Database