[Home] | [Total List]

[178271_at]

Description M01E5.4 /REP_DB=WormBase Gene ID /WP=CE12280 /TR=O45690 /GB=CAB07636.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 172.3
(-2.8)
A 		185.6
(-2.5)
A 		160.9
(-3)
A 		447.2
(3)
P 		286
B 246
(-0.3)
A 		162.4
(-3)
A 		223.5
(-1)
A 		349.5
(3)
P 		187
C 190.9
(-2.9)
A 		245.5
(-0.6)
A 		189
(-3)
A 		329
(3)
P 		140
avr 203.1
(-2.6) 		197.8
(-2.8) 		191.1
(-3) 		375.2
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 147.1
(-2.9)
A 		162.9
(-2.5)
P 		142.8
(-3)
P 		239.9
(-0.3)
P 		289.4
(1)
P 		362.1
(3)
P 		219
B 170.7
(-2.4)
A 		150.3
(-3)
A 		205.2
(-1.5)
P 		192.8
(-1.8)
M 		309.8
(1.4)
P 		366.9
(3)
P 		217
C 214.4
(-0.9)
A 		171.8
(-2.5)
A 		159.7
(-3)
M 		190
(-1.8)
P 		287.3
(1.9)
P 		315.2
(3)
P 		156
avr 177.4
(-2.5) 		161.7
(-3) 		169.2
(-2.8) 		207.6
(-1.5) 		295.5
(1.3) 		348.1
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 62.7
(2.3)
A 		40.3
(-3)
A 		42.1
(-2.6)
A 		65.5
(3)
P 		25
B 78.4
(3)
A 		40.1
(-3)
A 		51.8
(-1.2)
A 		74.5
(2.4)
P 		38
C 63.2
(0.1)
A 		70.6
(3)
A 		65.9
(1.1)
A 		55.5
(-3)
P 		15
avr 68.1
(3) 		50.3
(-3) 		53.3
(-2) 		65.2
(2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 27.1
(-3)
A 		57.9
(0)
P 		31.1
(-2.6)
P 		60.8
(0.3)
P 		87.3
(2.9)
P 		88.2
(3)
P 		61
B 59.4
(-2.3)
A 		50
(-3)
A 		49.8
(-3)
P 		51.1
(-2.9)
M 		125.9
(2.2)
P 		136.8
(3)
P 		87
C 79.5
(0.7)
A 		52.4
(-1.7)
A 		40.6
(-2.8)
M 		38.2
(-3)
P 		93
(1.9)
P 		105.5
(3)
P 		67
avr 55.3
(-1.7) 		53.4
(-1.9) 		40.5
(-3) 		50
(-2.2) 		102.1
(2.3) 		110.2
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1099
Sequence Type Exemplar sequence
Representative Public ID M01E5.4 NCBI
Target Description M01E5.4 /REP_DB=WormBase Gene ID /WP=CE12280 /TR=O45690 /GB=CAB07636.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060935 NCBI Caenorhabditis elegans M01E5.4 (M01E5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000016132 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13296075:13297659:-1 11/11 None
M01E5.4 ENSEMBL cdna:known chromosome:CEL140:I:13295683:13297659:-1 gene:M01E5.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016099 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13296005-13297590(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E5.4
Entrez Gene 173194 Entrez gene
SwissProt O45690 EMBL-EBI
WormBase CE12280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07636 Hypothetical protein M01E5.4 [Caenorhabditis elegans] ref|NP_493336.1| M01E5.4 [Caenorhabditis elegans] 1.0E-108
blast CAE73001 Hypothetical protein CBG20350 [Caenorhabditis briggsae] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:178271_AT
tcagtcgaacgtctatgttccgccacacttgagaaggcagaaaaaggaaaatgaagagaa
attttcagctttgaaagcttcccgatcacaatcccaatcagacactggttcagaagaagg
cgaaggagcatcaggaggcggtgaagccagttgtccgattcaacagaaacagaaagcatt
tgatgaaaatgtacggagacaagtacgccgaagaatcgaacgaactcacccgacagtcga
tgatatttgcatagtattggccaattatagccttcaggaagccgcttcaaaaaattcaga
aaattcgaatgaagaccttttcgagttggttttgacgctgaaatccggagaacagaagac
gattggagtgcccaggaacacacaagccgcccgtctcgcgaagtctctttcccgcgaaca
tcatttttcggactcccaatgcagaaatttgcgaattttcattgaagagcaactcgagct
ccgatttgctcgtgagaagtcaactgccacgtcatcagatgcatcgattcccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTCGAACGTCTATGTTCCGCCA 331 605 183 Antisense
TGTTCCGCCACACTTGAGAAGGCAG 296 563 198 Antisense
GCTTTGAAAGCTTCCCGATCACAAT 559 303 250 Antisense
CGATCACAATCCCAATCAGACACTG 238 249 265 Antisense
GGAGGCGGTGAAGCCAGTTGTCCGA 430 513 316 Antisense
GAAGAATCGAACGAACTCACCCGAC 29 341 392 Antisense
TATAGCCTTCAGGAAGCCGCTTCAA 120 659 448 Antisense
TGGAGTGCCCAGGAACACACAAGCC 703 549 546 Antisense
GCGAACATCATTTTTCGGACTCCCA 196 287 596 Antisense
AGAGCAACTCGAGCTCCGATTTGCT 571 69 648 Antisense
CGTCATCAGATGCATCGATTCCCGG 79 247 692 Antisense
Sequence Source Affymetrix Proprietary Database