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[178269_at]

Description T27C5.3 /REP_DB=WormBase Gene ID /WP=CE16497 /TR=O45847 /GB=CAB04864.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 0      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 7.5
(-2.7)
A 		4.3
(-3)
A 		46.7
(0.9)
A 		69
(3)
A 		65
B 7.5
(-3)
A 		9.6
(-2.6)
A 		20.2
(-0.9)
A 		43
(3)
A 		36
C 46
(0.2)
A 		9.5
(-2.8)
A 		7.6
(-3)
A 		79.8
(3)
A 		72
avr 20.3
(-1.7) 		7.8
(-3) 		24.8
(-1.2) 		63.9
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 56.9
(2.9)
A 		5.5
(-3)
A 		6.5
(-2.9)
A 		17.2
(-1.7)
A 		10.8
(-2.4)
A 		57.8
(3)
A 		52
B 3.1
(-3)
A 		53
(3)
A 		4.9
(-2.8)
A 		26
(-0.2)
A 		6.4
(-2.6)
A 		30.9
(0.3)
A 		50
C 38
(1.3)
A 		51.6
(3)
A 		6.5
(-2.8)
A 		4.6
(-3)
A 		7.8
(-2.6)
A 		51.3
(3)
A 		47
avr 32.7
(0.9) 		36.7
(1.5) 		6
(-3) 		15.9
(-1.5) 		8.3
(-2.7) 		46.7
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.7
(-2)
A 		0.9
(-3)
A 		12.2
(3)
A 		10.1
(1.9)
A 		11
B 2.4
(-3)
A 		2.4
(-3)
A 		4.7
(-1)
A 		9.2
(3)
A 		7
C 15.2
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		13.5
(2.2)
A 		13
avr 6.8
(0.2) 		2
(-3) 		6.5
(0) 		10.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.5
(1.3)
A 		1.9
(-2.8)
A 		1.4
(-3)
A 		4.4
(-1.6)
A 		3.3
(-2.1)
A 		14.1
(3)
A 		13
B 1.1
(-3)
A 		17.6
(3)
A 		1.2
(-3)
A 		6.9
(-0.9)
A 		2.6
(-2.5)
A 		11.5
(0.8)
A 		17
C 14.1
(1.9)
A 		15.8
(2.5)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		2.5
(-2.4)
A 		17.2
(3)
A 		16
avr 8.6
(0.3) 		11.8
(1.8) 		1.4
(-3) 		4.1
(-1.7) 		2.8
(-2.3) 		14.3
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13816
Sequence Type Exemplar sequence
Representative Public ID T27C5.3 NCBI
Target Description T27C5.3 /REP_DB=WormBase Gene ID /WP=CE16497 /TR=O45847 /GB=CAB04864.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075000
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T27C5.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17405101:17406763:1 gene:T27C5.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030289 3/11 Cross Hyb Matching Probes None
SNAP00000030290 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030299 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17405727-17406591(+) 79.5 100.0
Public Domain and Genome References
Ensembl T27C5.3
Sequence
Target Sequence 
>C. ELEGANS:178269_AT
ctcaaaaagtgtcggccgccgcaaagcgatgaactcagaaaatgtcggccgctgcaaaac
aacttcctattgcactacgttgtgcaaataccaagcctatgatttcacgcgaaattgcgg
accagccaaccgggacgactgcaagtactcgtggtctcaagagttttggctatttgcgtt
ttccactacaccggtgtgcttgaccatctcctggtatgcggattttgtgaaattcaacgc
gattgttatcctgattgcgatgattgacgtggtaaccgtatctaaagttagaacttataa
agcaaaggtattcaatggctcatcccagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAAAAGTGTCGGCCGCCGCAAA 603 225 18 Antisense
GGCCGCCGCAAAGCGATGAACTCAG 19 539 31 Antisense
GAACTCAGAAAATGTCGGCCGCTGC 562 347 48 Antisense
GCCGCTGCAAAACAACTTCCTATTG 393 281 65 Antisense
AATACCAAGCCTATGATTTCACGCG 684 171 104 Antisense
CGAAATTGCGGACCAGCCAACCGGG 103 253 127 Antisense
CAACCGGGACGACTGCAAGTACTCG 71 165 144 Antisense
CTCGTGGTCTCAAGAGTTTTGGCTA 367 231 165 Antisense
TGGCTATTTGCGTTTTCCACTACAC 133 545 184 Antisense
TCAACGCGATTGTTATCCTGATTGC 541 631 251 Antisense
AGGTATTCAATGGCTCATCCCAGTC 271 57 323 Antisense
Sequence Source Affymetrix Proprietary Database