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[178266_at]

Description C07E3.8 /REP_DB=WormBase Gene ID /WP=CE02123 /TR=Q17791 /GB=CAA90099.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 45.5
(-3)
A 		46.9
(-2.9)
A 		62
(-1.9)
A 		137
(3)
P 		92
B 81.1
(0.2)
A 		102.3
(3)
A 		56.4
(-3)
A 		85.6
(0.8)
A 		46
C 34.2
(-3)
A 		40.2
(-0.6)
A 		41.2
(-0.2)
A 		49.4
(3)
P 		15
avr 53.6
(-2.9) 		63.1
(-1.4) 		53.2
(-3) 		90.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 51.3
(-1.7)
A 		57.7
(-1)
A 		93.8
(3)
A 		39.9
(-3)
A 		85.4
(2.1)
A 		50.1
(-1.9)
A 		54
B 76
(3)
A 		40.3
(-1.3)
A 		62.9
(1.4)
A 		30.8
(-2.4)
A 		51
(0)
A 		25.6
(-3)
A 		50
C 49.1
(-0.4)
A 		60.3
(3)
A 		40.5
(-3)
A 		52.8
(0.7)
A 		42.2
(-2.5)
A 		47
(-1)
A 		20
avr 58.8
(1.3) 		52.8
(-0.1) 		65.7
(3) 		41.2
(-2.9) 		59.5
(1.5) 		40.9
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.6
(0.9)
A 		10.2
(-3)
A 		16.2
(0.6)
A 		20.1
(3)
P 		10
B 25.9
(3)
A 		25.3
(2.7)
A 		13.1
(-3)
A 		18.3
(-0.6)
A 		13
C 11.3
(-0)
A 		11.6
(0.2)
A 		14.4
(3)
A 		8.3
(-3)
P 		6
avr 17.9
(3) 		15.7
(-1) 		14.6
(-3) 		15.6
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.5
(-3)
A 		20.5
(1)
A 		20.4
(1)
A 		10.1
(-2.8)
A 		25.8
(3)
A 		12.2
(-2)
A 		16
B 26.4
(3)
A 		13.4
(-1.3)
A 		15.3
(-0.6)
A 		8.1
(-3)
A 		20.7
(1.1)
A 		9.6
(-2.5)
A 		18
C 18.2
(2.9)
A 		18.4
(3)
A 		10.3
(-3)
A 		10.6
(-2.8)
A 		13.7
(-0.5)
A 		15.7
(1)
A 		8
avr 18
(1.8) 		17.4
(1.5) 		15.3
(0.3) 		9.6
(-3) 		20.1
(3) 		12.5
(-1.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3255
Sequence Type Exemplar sequence
Representative Public ID C07E3.8 NCBI
Target Description C07E3.8 /REP_DB=WormBase Gene ID /WP=CE02123 /TR=Q17791 /GB=CAA90099.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063828 NCBI Caenorhabditis elegans C07E3.8 (C07E3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000023213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10352173:10353163:1 11/11 None
C07E3.8 ENSEMBL cdna:known chromosome:CEL140:II:10352173:10353401:1 gene:C07E3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023199 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10352169-10353398(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07E3.8
Entrez Gene 182373 Entrez gene
SwissProt Q17791 EMBL-EBI
WormBase CE02123 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90099 Hypothetical protein C07E3.8 [Caenorhabditis elegans] ref|NP_496229.1| C07E3.8 [Caenorhabditis elegans] 1.0E-176
blast CAA90099 Hypothetical protein C07E3.8 [Caenorhabditis elegans] ref|NP_496229.1| C07E3.8 [Caenorhabditis elegans] 1.0E-113
blast CAB55091 Hypothetical protein Y47D3A.1 [Caenorhabditis elegans] ref|NP_499436.1| Y47D3A.1 [Caenorhabditis elegans] 1.0E-16
blast CAD91711 Hypothetical protein Y48A6C.5b [Caenorhabditis elegans] ref|NP_001022891.1| defective PHArynx development family member (pha-1) [Caenorhabditis elegans] 4.0E-16
blast CAB55091 Hypothetical protein Y47D3A.1 [Caenorhabditis elegans] ref|NP_499436.1| Y47D3A.1 [Caenorhabditis elegans] 1.0E-14
blast CAD91711 Hypothetical protein Y48A6C.5b [Caenorhabditis elegans] ref|NP_001022891.1| defective PHArynx development family member (pha-1) [Caenorhabditis elegans] 5.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 7.3E-21
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 2.5E-24
Sequence
Target Sequence 
>C. ELEGANS:178266_AT
gaaggtgtattcgagaccccatttgaaaaacctcatcattttgaatcactggaaataacc
agcttcacgatcgattgtttattgtatggaaaccgattccgtccaactttggtaaacttc
aaaaacgcgcccatcacagttgattcgctctcaattaatgccccttcttccggaatccca
aaagtatttctcagtgctatgatgatttccaagtggaagttattgattctaaaaacctgc
gaggattccccgtatgcaatggaggagcttcagttaagtttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTGTATTCGAGACCCCATTTG 241 335 361 Antisense
GAGACCCCATTTGAAAAACCTCATC 271 393 373 Antisense
AAACCTCATCATTTTGAATCACTGG 91 127 388 Antisense
AATAACCAGCTTCACGATCGATTGT 395 171 414 Antisense
TTGTATGGAAACCGATTCCGTCCAA 357 707 442 Antisense
TCAAAAACGCGCCCATCACAGTTGA 269 629 479 Antisense
TTGATTCGCTCTCAATTAATGCCCC 279 701 500 Antisense
TCCGGAATCCCAAAAGTATTTCTCA 310 593 529 Antisense
CAGTGCTATGATGATTTCCAAGTGG 31 207 552 Antisense
GAGGATTCCCCGTATGCAATGGAGG 515 403 601 Antisense
GGAGGAGCTTCAGTTAAGTTTGACT 250 515 621 Antisense
Sequence Source Affymetrix Proprietary Database