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[178265_at]

Description D2045.9 /REP_DB=WormBase Gene ID /WP=CE15743 /TR=Q18989 /GB=CAA84699.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 61      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 57.7
(0.9)
P 		37.9
(-1.8)
A 		73.6
(3)
A 		28.7
(-3)
A 		45
B 81
(3)
P 		74
(2.1)
P 		67.1
(1.2)
P 		33.7
(-3)
A 		47
C 72.7
(2.1)
P 		68.6
(1.4)
P 		78.2
(3)
P 		41.6
(-3)
A 		37
avr 70.5
(2.6) 		60.2
(1) 		73
(3) 		34.7
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 51.5
(-0.7)
A 		46
(-1.5)
A 		37.4
(-2.7)
P 		34.9
(-3)
P 		46.1
(-1.5)
A 		78.3
(3)
P 		43
B 63.2
(1.8)
P 		25.3
(-3)
A 		38.4
(-1.3)
P 		26.5
(-2.8)
M 		32.9
(-2)
A 		72.6
(3)
P 		47
C 46.9
(0.9)
A 		50.8
(1.7)
P 		57
(3)
P 		51.7
(1.9)
A 		48.5
(1.2)
A 		28.5
(-3)
P 		29
avr 53.9
(1.4) 		40.7
(-2.2) 		44.3
(-1.2) 		37.7
(-3) 		42.5
(-1.7) 		59.8
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21
(3)
P 		8.2
(-1.6)
A 		19.3
(2.4)
A 		4.2
(-3)
A 		17
B 25.8
(3)
P 		18.3
(0.6)
P 		15.5
(-0.3)
P 		7.2
(-3)
A 		19
C 24.1
(2.1)
P 		19.7
(0.8)
P 		27.3
(3)
P 		7
(-3)
A 		20
avr 23.6
(3) 		15.4
(0.2) 		20.7
(2) 		6.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.5
(-2.2)
A 		16.3
(1.5)
A 		8.1
(-3)
P 		8.8
(-2.6)
P 		13.9
(0.2)
A 		19.1
(3)
P 		11
B 22
(1.5)
P 		8.4
(-2.6)
A 		9.3
(-2.3)
P 		7
(-3)
M 		13.4
(-1.1)
A 		27.1
(3)
P 		20
C 17.4
(3)
A 		15.5
(1.6)
P 		14.5
(0.8)
P 		10.4
(-2.3)
A 		15.7
(1.7)
A 		9.5
(-3)
P 		8
avr 16.3
(1.6) 		13.4
(-0.2) 		10.6
(-1.8) 		8.7
(-3) 		14.3
(0.4) 		18.6
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6387
Sequence Type Exemplar sequence
Representative Public ID D2045.9 NCBI
Target Description D2045.9 /REP_DB=WormBase Gene ID /WP=CE15743 /TR=Q18989 /GB=CAA84699.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026062 NCBI Caenorhabditis elegans D2045.9 (D2045.9) mRNA, complete cds. 11/11 None
SNAP00000022543 ENSEMBL cdna:SNAP chromosome:CEL140:III:10475298:10479325:1 11/11 None
GENEFINDER00000022546 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10475869:10482025:1 11/11 None
D2045.9.2 ENSEMBL cdna:known chromosome:CEL140:III:10475849:10479325:1 gene:D2045.9 11/11 None
D2045.9.1 ENSEMBL cdna:known chromosome:CEL140:III:10475851:10479666:1 gene:D2045.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10475864-10478982(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2045.9
Entrez Gene 3565069 Entrez gene
SwissProt Q18989 EMBL-EBI
WormBase CE33988 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20790.1.S1_AT similar to glycosyltransferase 25 domain containing 2 cfa
DROSOPHILA_2:1627512_AT dm
DROSGENOME1:145827_AT dm
CHICKEN:GGA.16893.1.S1_AT glycosyltransferase 25 domain containing 2 gga
CHICKEN:GGA.16893.1.S1_S_AT glycosyltransferase 25 domain containing 2 gga
CHICKEN:GGA.3249.1.S1_AT glycosyltransferase 25 domain containing 2 gga
HG-U133_PLUS_2:209883_AT glycosyltransferase 25 domain containing 2 hs
HG-U133A:209883_AT glycosyltransferase 25 domain containing 2 hs
HG-U133A_2:209883_AT glycosyltransferase 25 domain containing 2 hs
HU35KSUBD:RC_N39138_AT glycosyltransferase 25 domain containing 2 hs
HU35KSUBD:RC_F01576_AT glycosyltransferase 25 domain containing 2 hs
U133_X3P:G12620187_3P_AT glycosyltransferase 25 domain containing 2 hs
HG-U95AV2:39550_AT glycosyltransferase 25 domain containing 2 hs
HU35KSUBA:W27139_AT Glycosyltransferase 25 domain containing 2 hs
HU35KSUBB:RC_H11448_AT Glycosyltransferase 25 domain containing 2 hs
MOE430B:1437930_AT glycosyltransferase 25 domain containing 2 mm
MOUSE430_2:1437930_AT glycosyltransferase 25 domain containing 2 mm
MG-U74BV2:114233_AT glycosyltransferase 25 domain containing 2 mm
MG-U74CV2:129112_AT Glycosyltransferase 25 domain containing 2, mRNA (cDNA clone MGC:92944 IMAGE:5706069) mm
MOUSE430_2:1442534_AT Glycosyltransferase 25 domain containing 2, mRNA (cDNA clone MGC:92944 IMAGE:5706069) mm
MOE430B:1442534_AT Glycosyltransferase 25 domain containing 2, mRNA (cDNA clone MGC:92944 IMAGE:5706069) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9103 lipopolysaccharide biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84699 Hypothetical protein D2045.9 [Caenorhabditis elegans] ref|NP_001021233.1| D2045.9 [Caenorhabditis elegans] 0.0
blast CAE71465 Hypothetical protein CBG18383 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002654 EMBL-EBI Glycosyl transferase, family 25 1.3E-36
Pfam IPR002654 EMBL-EBI Glycosyl transferase, family 25 1.3E-36
Pfam IPR000719 EMBL-EBI Protein kinase 4.6E-23
Pfam IPR002654 EMBL-EBI Glycosyl transferase, family 25 1.3E-36
Sequence
Target Sequence 
>C. ELEGANS:178265_AT
gaaacgccgacaggaacgtctcaacagaatgcagaaaatctttgatattcttggaatcga
atattctcttctagaagctaccgatggacaaaagcttgatgagctgccggaagagctaaa
aaattatcagatactggaaggatacctagacccaattagtaaaaggcccatgaaaaatgg
agaaattggatgctttttgagccattacagagtatggcaagacgtcgttcaacacaacta
cgagaaagtgatagttttcgaggatgatctccgattttcacacgacggtttgaccagaat
tcgggaggttcttcaagatctagacgcttcacataagccgtgggatttgatttatttggg
acggaaaaagcaatctgaaaatgaagaattatggatttcacagcacagacatttatcgtc
tgttgagtattcatattggacactaggttacatgttatctctcaatggagcgcggaagct
tctgagaccgaatccgttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGCCGACAGGAACGTCTCAAC 43 357 903 Antisense
TCTCTTCTAGAAGCTACCGATGGAC 6 613 967 Antisense
GGAAGGATACCTAGACCCAATTAGT 167 527 1038 Antisense
GCAAGACGTCGTTCAACACAACTAC 485 321 1119 Antisense
CGAGGATGATCTCCGATTTTCACAC 215 249 1161 Antisense
GATTTTCACACGACGGTTTGACCAG 50 429 1175 Antisense
GAATTCGGGAGGTTCTTCAAGATCT 46 323 1199 Antisense
TAGACGCTTCACATAAGCCGTGGGA 494 649 1223 Antisense
ATTTCACAGCACAGACATTTATCGT 687 15 1297 Antisense
ACTAGGTTACATGTTATCTCTCAAT 6 101 1344 Antisense
AAGCTTCTGAGACCGAATCCGTTGA 708 149 1378 Antisense
Sequence Source Affymetrix Proprietary Database