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[178264_at]

Description F01D5.8 /REP_DB=WormBase Gene ID /WP=CE18565 /TR=Q9XVA7 /GB=CAB04043.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_high_8_8 > 43      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 158.2
(1.8)
P 		128.6
(-2.3)
P 		166.6
(3)
P 		123.5
(-3)
A 		43
B 172.8
(3)
P 		165.6
(2.4)
P 		143.8
(0.7)
P 		96.5
(-3)
A 		76
C 177.6
(1.5)
P 		207
(3)
P 		132
(-0.9)
P 		92.5
(-3)
P 		115
avr 169.5
(3) 		167.1
(2.8) 		147.5
(1) 		104.2
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 165.5
(3)
P 		121.3
(-0.6)
P 		92.1
(-3)
P 		136.8
(0.7)
P 		119.6
(-0.8)
P 		147.6
(1.5)
P 		73
B 154.6
(1.7)
P 		82.6
(-3)
P 		93
(-2.3)
P 		85.3
(-2.8)
P 		175.4
(3)
P 		115.3
(-0.9)
P 		93
C 148.9
(3)
P 		110.1
(-0.8)
P 		139.4
(2.1)
P 		87.5
(-3)
P 		132.1
(1.4)
P 		129.1
(1.1)
P 		61
avr 156.3
(3) 		104.7
(-2.8) 		108.2
(-2.4) 		103.2
(-3) 		142.4
(1.4) 		130.7
(0.1) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 57.6
(3)
P 		27.9
(-1.5)
P 		43.6
(0.9)
P 		18.1
(-3)
A 		40
B 55.1
(3)
P 		40.9
(0.5)
P 		33.3
(-0.8)
P 		20.6
(-3)
A 		35
C 58.8
(2.9)
P 		59.5
(3)
P 		46
(1.2)
P 		15.6
(-3)
P 		44
avr 57.2
(3) 		42.8
(0.8) 		41
(0.5) 		18.1
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 30.5
(-0.3)
P 		43.1
(3)
P 		20.1
(-3)
P 		34.7
(0.8)
P 		36.1
(1.2)
P 		35.9
(1.1)
P 		23
B 53.8
(0.8)
P 		27.5
(-2.4)
P 		22.6
(-3)
P 		22.6
(-3)
P 		71.3
(3)
P 		43
(-0.5)
P 		49
C 55.2
(3)
P 		33.6
(-0.4)
P 		35.5
(-0.1)
P 		17.6
(-3)
P 		42.7
(1)
P 		43.2
(1.1)
P 		38
avr 46.5
(2.2) 		34.7
(-0.7) 		26.1
(-2.7) 		25
(-3) 		50
(3) 		40.7
(0.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3659
Sequence Type Exemplar sequence
Representative Public ID F01D5.8 NCBI
Target Description F01D5.8 /REP_DB=WormBase Gene ID /WP=CE18565 /TR=Q9XVA7 /GB=CAB04043.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064537 NCBI Caenorhabditis elegans F01D5.8 (F01D5.8) mRNA, complete cds. 11/11 None
SNAP00000039844 ENSEMBL cdna:SNAP chromosome:CEL140:II:14012096:14013648:1 11/11 None
GENEFINDER00000039849 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14010585:14013648:1 11/11 None
F01D5.8 ENSEMBL cdna:known chromosome:CEL140:II:14011112:14013698:1 gene:F01D5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14012436-14013645(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01D5.8
Entrez Gene 175052 Entrez gene
SwissProt Q9XVA7 EMBL-EBI
WormBase CE18565 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE73388 Hypothetical protein CBG20828 [Caenorhabditis briggsae] 0.0
blast CAE73388 Hypothetical protein CBG20828 [Caenorhabditis briggsae] 1.0E-176
blast CAB04043 Hypothetical protein F01D5.8 [Caenorhabditis elegans] ref|NP_496938.1| F01D5.8 [Caenorhabditis elegans] 1.0E-170
blast CAE73388 Hypothetical protein CBG20828 [Caenorhabditis briggsae] 1.0E-150
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 1.0E-136
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:178264_AT
tgaactttgtcacctatgcgaacgtttttgagactgacttatatgcatttgactattctg
gatacggcttctcctcggggactcaaggcgaaaagaacgtgtacgccgatgtgagagcag
tttatgaaaagattttggagatgagaccggataagaagatcgtcgtgatggggtacagta
tcggaacgactgcagcagtcgacctggcagctaccaatccggatagactggctggagttg
tgctgattgctccgttcaccagcgggctcagacttttctccagtaaaccggataagccgg
acacatgctgggcggattctttcaaaagcttcgacaaaatcaataacatcgacactcgtg
tcctgatttgtcacggagatgttgatgaggtgatccccctgtcacatggtctggctctct
acgaaaagctcaaaaatccggttcccccgctcatcgtccacggcgcaaaccatcacacca
ttctcagcgggaagtatatccatgtcttcactcgtattgcaaacttccttcgtaacgaga
ccctcgtgagctgccgtagcgctgaagtcgactcgtcacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTTTGTCACCTATGCGAACGT 262 573 308 Antisense
GACTATTCTGGATACGGCTTCTCCT 361 371 358 Antisense
TTCTCCTCGGGGACTCAAGGCGAAA 667 687 376 Antisense
GGCAGCTACCAATCCGGATAGACTG 667 535 513 Antisense
GCTCAGACTTTTCTCCAGTAAACCG 652 297 573 Antisense
GACACATGCTGGGCGGATTCTTTCA 258 367 607 Antisense
TCGACACTCGTGTCCTGATTTGTCA 522 601 656 Antisense
ATCACACCATTCTCAGCGGGAAGTA 559 25 779 Antisense
AAGTATATCCATGTCTTCACTCGTA 643 155 799 Antisense
CACTCGTATTGCAAACTTCCTTCGT 660 197 816 Antisense
AGCGCTGAAGTCGACTCGTCACAGC 710 81 865 Antisense
Sequence Source Affymetrix Proprietary Database