[Home] | [Total List]

[178263_at]

Description T27C5.5 /REP_DB=WormBase Gene ID /WP=CE16499 /TR=O45849 /GB=CAB04866.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 19      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3
(-3)
A 		9.6
(0)
A 		4.7
(-2.2)
A 		16
(3)
A 		13
B 4.9
(3)
A 		2.8
(-0.7)
A 		1.5
(-3)
A 		2.1
(-1.9)
A 		3
C 6.1
(-2.1)
A 		8.2
(-0.7)
A 		4.7
(-3)
A 		13.7
(3)
A 		9
avr 4.7
(-2.1) 		6.9
(-0.2) 		3.6
(-3) 		10.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 26.1
(3)
A 		2.5
(-3)
A 		13.4
(-0.2)
A 		3.3
(-2.8)
A 		5.5
(-2.2)
A 		17.1
(0.7)
A 		24
B 3.5
(-2.3)
A 		7.5
(2.2)
A 		8.2
(3)
A 		3.6
(-2.2)
A 		6.7
(1.3)
A 		2.9
(-3)
A 		5
C 1.6
(-3)
A 		16.5
(3)
A 		9.8
(0.3)
A 		5.2
(-1.6)
A 		2.4
(-2.7)
A 		3.1
(-2.4)
A 		15
avr 10.4
(2.9) 		8.8
(1.4) 		10.5
(3) 		4
(-3) 		4.9
(-2.2) 		7.7
(0.4) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(-3)
A 		2.1
(2)
A 		1.2
(-2.5)
A 		2.3
(3)
A 		1
B 1.6
(3)
A 		0.7
(-1.2)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		1
C 2
(-0.4)
A 		2.4
(3)
A 		1.7
(-3)
A 		2.3
(2.1)
A 		1
avr 1.6
(2) 		1.7
(3) 		1.1
(-3) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.8
(3)
A 		0.9
(-2.9)
A 		2.9
(0.1)
A 		0.8
(-3)
A 		1.7
(-1.7)
A 		4.2
(2.1)
A 		4
B 1.2
(-2.3)
A 		2.5
(2.3)
A 		2
(0.5)
A 		1
(-3)
A 		2.7
(3)
A 		1.1
(-2.6)
A 		2
C 0.6
(-3)
A 		5
(3)
A 		2.5
(-0.4)
A 		1
(-2.5)
A 		0.8
(-2.7)
A 		1
(-2.5)
A 		4
avr 2.2
(1.1) 		2.8
(3) 		2.5
(2.1) 		0.9
(-3) 		1.7
(-0.5) 		2.1
(0.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14033
Sequence Type Exemplar sequence
Representative Public ID T27C5.5 NCBI
Target Description T27C5.5 /REP_DB=WormBase Gene ID /WP=CE16499 /TR=O45849 /GB=CAB04866.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075003 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-132) (srh-132) mRNA, complete cds. 11/11 A 
SNAP00000030293 ENSEMBL cdna:SNAP chromosome:CEL140:V:17412964:17414282:1 11/11 None
GENEFINDER00000030303 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17412964:17414282:1 11/11 None
T27C5.5 ENSEMBL cdna:known chromosome:CEL140:V:17412832:17414282:1 gene:T27C5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17412831-17414282(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-132
Ensembl T27C5.5
Entrez Gene 188984 Entrez gene
SwissProt O45849 EMBL-EBI
WormBase CE16499 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04866 Hypothetical protein T27C5.5 [Caenorhabditis elegans] ref|NP_507404.1| Serpentine Receptor, class H family member (srh-132) [Caenorhabditis elegans] 0.0
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 0.0
blast CAB04866 Hypothetical protein T27C5.5 [Caenorhabditis elegans] ref|NP_507404.1| Serpentine Receptor, class H family member (srh-132) [Caenorhabditis elegans] 1.0E-173
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 1.0E-157
blast CAC14413 Hypothetical protein Y59A8B.3 [Caenorhabditis elegans] ref|NP_507522.1| Serpentine Receptor, class H family member (srh-133) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507404.1 7 17-39,52-74,96-118,138-157,194-216,237-259,274-296
T27C5.5 7 17-39,52-74,96-118,138-157,194-216,237-259,274-296
SNAP00000030293 6 9-31,51-73,94-113,150-172,193-215,230-252
GENEFINDER00000030303 6 9-31,51-73,94-113,150-172,193-215,230-252
Sequence
Target Sequence 
>C. ELEGANS:178263_AT
ctatgcattgatgttcacgcttcccttgtgctataaccagccagatcaaatggaagggag
aaaatttgtgaaaaggacccttccctgtgtacccgaatcaataattgatgaccccgactt
tcacatttggcttgaggaaccaatgatctatgcaatacattacgctatcaccgcatcagt
tattacgttggaagtcatctactatttcgtgcatactgccttatttctctcgagtaccaa
agcaaaatcacagaaaacgcacaaaatgcaagtgcaatttttcatcgcgttgacgattca
aatagcggttccactgtttattgtgatctttccactttcgtatcttattacggcattcat
aacattgcatttcgatcagatgtacaacaatcttgctctgaatttcatcgcactccacgg
cctggcctccagttcagtgatgctaatagttcataaaccataccgagacgcagttgcaga
cttgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATGCATTGATGTTCACGCTTCCC 67 225 450 Antisense
CCGACTTTCACATTTGGCTTGAGGA 536 261 563 Antisense
ATGCAATACATTACGCTATCACCGC 79 45 599 Antisense
ATCACCGCATCAGTTATTACGTTGG 101 29 616 Antisense
GCCTTATTTCTCTCGAGTACCAAAG 219 269 667 Antisense
ACGATTCAAATAGCGGTTCCACTGT 355 91 742 Antisense
GCGGTTCCACTGTTTATTGTGATCT 238 293 754 Antisense
TGATCTTTCCACTTTCGTATCTTAT 602 565 773 Antisense
ACAATCTTGCTCTGAATTTCATCGC 321 115 836 Antisense
GGCCTCCAGTTCAGTGATGCTAATA 166 543 873 Antisense
CGAGACGCAGTTGCAGACTTGCTCC 250 251 913 Antisense
Sequence Source Affymetrix Proprietary Database