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[178261_at]

Description K09E4.1 /REP_DB=WormBase Gene ID /WP=CE19994 /TR=Q9NAP8 /GB=CAB70168.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 57      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 29.3
(-0.3)
A 		39.3
(0.7)
A 		61.5
(3)
A 		3.4
(-3)
A 		58
B 9.4
(-3)
A 		51
(3)
A 		20.4
(-1.4)
A 		24
(-0.9)
A 		42
C 46.5
(-3)
A 		53.7
(-1.5)
A 		75.9
(3)
A 		48.6
(-2.6)
A 		29
avr 28.4
(-2.3) 		48
(2) 		52.6
(3) 		25.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 5.3
(-3)
A 		8.9
(-2.8)
A 		52.7
(-0.3)
A 		6.8
(-2.9)
A 		102.9
(2.5)
A 		111.1
(3)
A 		106
B 21.3
(-2.3)
A 		27.9
(-1.9)
A 		12
(-3)
A 		21.7
(-2.3)
A 		77.5
(1.7)
P 		95.9
(3)
P 		84
C 3
(-3)
A 		7.2
(-2.7)
A 		8.7
(-2.6)
A 		75.4
(2.3)
A 		85.2
(3)
A 		66.3
(1.6)
A 		82
avr 9.9
(-3) 		14.7
(-2.6) 		24.5
(-1.9) 		34.6
(-1.2) 		88.5
(2.8) 		91.1
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 10.7
(0.9)
A 		8.5
(0.1)
A 		16.1
(3)
A 		0.5
(-3)
A 		16
B 3
(-3)
A 		12.6
(3)
A 		4.7
(-1.9)
A 		5.1
(-1.7)
A 		10
C 15.4
(-0.6)
A 		15.4
(-0.6)
A 		26.4
(3)
A 		8.2
(-3)
A 		18
avr 9.7
(-0.2) 		12.2
(1.1) 		15.7
(3) 		4.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1
(-3)
A 		3.2
(-2.6)
A 		11.5
(-0.9)
A 		1.7
(-2.9)
A 		31
(3)
A 		27
(2.2)
A 		30
B 7.4
(-2.2)
A 		9.3
(-1.8)
A 		2.9
(-3)
A 		5.7
(-2.5)
A 		31.5
(2.2)
P 		35.8
(3)
P 		33
C 1.1
(-3)
A 		2.2
(-2.8)
A 		2.2
(-2.8)
A 		15.2
(0.2)
A 		27.6
(3)
A 		22.2
(1.8)
A 		27
avr 3.2
(-3) 		4.9
(-2.6) 		5.5
(-2.5) 		7.5
(-2) 		30
(3) 		28.3
(2.6) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3290
Sequence Type Exemplar sequence
Representative Public ID K09E4.1 NCBI
Target Description K09E4.1 /REP_DB=WormBase Gene ID /WP=CE19994 /TR=Q9NAP8 /GB=CAB70168.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064551 NCBI Caenorhabditis elegans K09E4.1 (K09E4.1) mRNA, complete cds. 11/11 None
SNAP00000022862 ENSEMBL cdna:SNAP chromosome:CEL140:II:14113869:14139901:1 11/11 None
GENEFINDER00000022866 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14137777:14139925:1 11/11 None
K09E4.1 ENSEMBL cdna:known chromosome:CEL140:II:14137736:14139949:1 gene:K09E4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027648 7/11 Cross Hyb Matching Probes None
SNAP00000006149 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006271 7/11 Cross Hyb Matching Probes None
Y111B2A.27 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14137773-14139922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E4.1
Entrez Gene 175067 Entrez gene
SwissProt Q9NAP8 EMBL-EBI
WormBase CE19994 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB70168 Hypothetical protein K09E4.1 [Caenorhabditis elegans] ref|NP_496952.1| K09E4.1 [Caenorhabditis elegans] 0.0
blast CAE73536 Hypothetical protein CBG20999 [Caenorhabditis briggsae] 1.0E-130
blast CAE17963 Hypothetical protein Y111B2A.27 [Caenorhabditis elegans] ref|NP_001022819.1| Y111B2A.27 [Caenorhabditis elegans] 4.0E-87
Sequence
Target Sequence 
>C. ELEGANS:178261_AT
ccgcaacatggatctcaacagcttccactacgatgcggcaagccgtcacctcttcatggc
ggacatctcgtctttggtcaagaacatttctggtgatgatggagctccgattgctagcta
cgctggctgcttggattatgctccgtgcagtgacgatggtcttgttggcgcccggcagga
tctcgagacatggttctaccagctggttcacctggtgctcggcgagctcccatggggaag
tctgagccgcgaagaggctggagtcaagaaggccgagttccagaagagcaaggaattcgc
ggagcttccagaggtgttccacaagattgccgaagtggttatcgccaaggaatactcggt
tgtcgaggaggaggaatatgtcaagttggcagggctcacggagcaaatctacaaggagct
cggaggtgtgacggatcacgaggagaatatggatttcgagcgggagccgacgccggatga
gcttccacgttttgtggcgtgccgtgccgatgagattccgacgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCAACATGGATCTCAACAGCTTC 398 263 546 Antisense
CAGCTTCCACTACGATGCGGCAAGC 527 201 564 Antisense
GATGGAGCTCCGATTGCTAGCTACG 273 407 643 Antisense
GCTACGCTGGCTGCTTGGATTATGC 452 303 662 Antisense
TGCTCCGTGCAGTGACGATGGTCTT 652 579 684 Antisense
GGATCTCGAGACATGGTTCTACCAG 39 513 723 Antisense
CTACCAGCTGGTTCACCTGGTGCTC 663 223 741 Antisense
TCCCATGGGGAAGTCTGAGCCGCGA 640 593 773 Antisense
GAATTCGCGGAGCTTCCAGAGGTGT 445 323 838 Antisense
TCAAGTTGGCAGGGCTCACGGAGCA 584 631 926 Antisense
CCGTGCCGATGAGATTCCGACGATC 401 265 1047 Antisense
Sequence Source Affymetrix Proprietary Database