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[178260_at]

Description F19B2.1 /REP_DB=WormBase Gene ID /WP=CE20693 /TR=Q9XXS8 /GB=CAA16271.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 35      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 29.9
(3)
A 		3.8
(-3)
A 		7.4
(-2.2)
A 		21.9
(1.2)
A 		26
B 21
(-0.6)
A 		46.6
(3)
A 		3.7
(-3)
A 		42.7
(2.5)
A 		43
C 4.8
(-3)
A 		52.3
(3)
A 		17.9
(-1.3)
A 		11.5
(-2.2)
A 		48
avr 18.6
(-0.8) 		34.2
(3) 		9.7
(-3) 		25.4
(0.8) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.5
(-3)
A 		39.5
(3)
A 		34.3
(2.1)
A 		6.8
(-2.5)
A 		5.8
(-2.6)
A 		32.2
(1.8)
A 		36
B 4.9
(-2.6)
A 		36.1
(3)
A 		3.1
(-3)
A 		28.6
(1.6)
A 		2.9
(-3)
A 		19.7
(0)
A 		33
C 17.7
(1.6)
A 		14.2
(0.6)
A 		1.8
(-3)
A 		3.2
(-2.6)
A 		22.6
(3)
A 		6.9
(-1.5)
A 		21
avr 8.7
(-3) 		29.9
(3) 		13.1
(-1.8) 		12.9
(-1.8) 		10.4
(-2.5) 		19.6
(0.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.9
(3)
A 		0.8
(-3)
A 		1.9
(-2.3)
A 		3.2
(-1.6)
A 		10
B 6.7
(0.3)
A 		11.5
(3)
A 		0.9
(-3)
A 		9.1
(1.6)
A 		11
C 1.6
(-3)
A 		15
(3)
A 		6.3
(-0.9)
A 		1.9
(-2.9)
A 		13
avr 6.4
(0.3) 		9.1
(3) 		3
(-3) 		4.7
(-1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-3)
A 		14.1
(3)
A 		7.5
(0.1)
A 		1.7
(-2.5)
A 		1.8
(-2.5)
A 		7.8
(0.2)
A 		14
B 1.7
(-2.5)
A 		12
(3)
A 		0.7
(-3)
A 		7.6
(0.7)
A 		1.2
(-2.7)
A 		7.4
(0.6)
A 		11
C 6.6
(2.4)
A 		4.3
(0.4)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		7.3
(3)
A 		2.3
(-1.4)
A 		7
avr 3
(-2.9) 		10.1
(3) 		2.9
(-3) 		3.3
(-2.7) 		3.4
(-2.6) 		5.8
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13026
Sequence Type Exemplar sequence
Representative Public ID F19B2.1 NCBI
Target Description F19B2.1 /REP_DB=WormBase Gene ID /WP=CE20693 /TR=Q9XXS8 /GB=CAA16271.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019297 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20172000:20178757:-1 9/11 None
F19B2.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:20172985:20180753:-1 gene:F19B2.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F19B2.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F19B2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21102 hypothetical protein F19B2.1 - Caenorhabditis elegans 0.0
blast AAF35422 Hypothetical protein C52E2.8 [Caenorhabditis elegans] ref|NP_494098.1| C52E2.8 [Caenorhabditis elegans] 9.0E-39
blast T21103 hypothetical protein F19B2.4 - Caenorhabditis elegans 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 9.1E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019297 3 307-329,349-371,391-413
Sequence
Target Sequence 
>C. ELEGANS:178260_AT
gataccatcccagaaaaggctaccgtgaaccgagatgtctctacgtgccatctttttggg
gccgggagtgtcgcgaactcaataacatacgtgtgcctgaacattatattgatccttgcc
tctttactataccttccgattttgatcaatgtcagaaagttctctcatttaccttccatt
caacagaacaacccacaaaagtacattttctggcaaaccttcaatgtcctcatatttaaa
ttaactttcttcgcatctgtggcctactctctgatcttcttgacaccatttgagcaaatg
gtaattttactgttattaggcgatatttttatcattcctctagtcatccaagtatcatat
atttgctgtaacaaaaagagtatggatacgttgttcaagtcgttcagctggatcaaattt
ataaacattttgtttaatattaaggagaagacacttatagcgccacagacagttccaagg
ggcaacacgtgcccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCATCCCAGAAAAGGCTACCG 135 425 829 Antisense
TATATTGATCCTTGCCTCTTTACTA 474 661 933 Antisense
CTCTTTACTATACCTTCCGATTTTG 111 229 948 Antisense
CAGAAAGTTCTCTCATTTACCTTCC 467 203 981 Antisense
TTCTGGCAAACCTTCAATGTCCTCA 469 681 1036 Antisense
AAATTAACTTTCTTCGCATCTGTGG 152 115 1066 Antisense
CTCTGATCTTCTTGACACCATTTGA 114 233 1097 Antisense
TTATCATTCCTCTAGTCATCCAAGT 216 679 1157 Antisense
GTTGTTCAAGTCGTTCAGCTGGATC 545 437 1218 Antisense
TTATAGCGCCACAGACAGTTCCAAG 550 679 1283 Antisense
TCCAAGGGGCAACACGTGCCCACCA 36 587 1302 Antisense
Sequence Source Affymetrix Proprietary Database