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[178259_at]

Description F36A2.3 /REP_DB=WormBase Gene ID /WP=CE15964 /TR=O62128 /GB=CAB03073.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 21      6grp_total > 12      4grp_total > 40      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 745
1 2 3 4 range
A 1443.6
(-3)
P 		1698.5
(-0.8)
P 		2138.5
(3)
P 		1582.3
(-1.8)
P 		695
B 1461.4
(-3)
P 		2098.5
(3)
P 		2050
(2.5)
P 		1875.9
(0.9)
P 		637
C 1393.6
(-3)
P 		1660.8
(-0.8)
P 		2124.5
(3)
P 		1702.8
(-0.5)
P 		731
avr 1432.9
(-3) 		1819.3
(0.5) 		2104.3
(3) 		1720.3
(-0.4) 		671

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 987
1 2 3 4 5 6 range
A 1501.8
(1.7)
P 		1670.2
(3)
P 		1310.3
(0.3)
P 		1306.3
(0.2)
P 		998.4
(-2.1)
P 		880.6
(-3)
P 		790
B 1660.4
(2.5)
P 		1720.8
(3)
P 		1426.8
(0.6)
P 		1406.9
(0.5)
P 		972.4
(-3)
P 		1019
(-2.6)
P 		748
C 1495
(0.8)
P 		1853.2
(3)
P 		1358.3
(-0)
P 		1287.8
(-0.4)
P 		866.6
(-3)
P 		1108.5
(-1.5)
P 		987
avr 1552.4
(1.5) 		1748.1
(3) 		1365.1
(0.1) 		1333.7
(-0.1) 		945.8
(-3) 		1002.7
(-2.6) 		802
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 525.6
(2.4)
P 		368.7
(-0.5)
P 		559
(3)
P 		231.6
(-3)
P 		327
B 466
(0.4)
P 		518.3
(3)
P 		475
(0.8)
P 		399.8
(-3)
P 		119
C 461.3
(-0.7)
P 		477.5
(-0.5)
P 		740.4
(3)
P 		287.1
(-3)
P 		453
avr 484.3
(0.7) 		454.8
(0.1) 		591.5
(3) 		306.2
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 276.9
(-2)
P 		594
(3)
P 		285.3
(-1.9)
P 		331.3
(-1.2)
P 		301.3
(-1.6)
P 		214.4
(-3)
P 		380
B 577.7
(3)
P 		572.8
(2.9)
P 		346.5
(-3)
P 		372.7
(-2.3)
P 		395.1
(-1.7)
P 		380
(-2.1)
P 		231
C 554.1
(2.8)
P 		565.5
(3)
P 		345.7
(-1.3)
P 		259
(-3)
P 		280.4
(-2.6)
P 		371.1
(-0.8)
P 		307
avr 469.6
(0.5) 		577.4
(3) 		325.8
(-2.9) 		321
(-3) 		325.6
(-2.9) 		321.8
(-3) 		256
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1647
Sequence Type Exemplar sequence
Representative Public ID F36A2.3 NCBI
Target Description F36A2.3 /REP_DB=WormBase Gene ID /WP=CE15964 /TR=O62128 /GB=CAB03073.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059977 NCBI Caenorhabditis elegans F36A2.3 (F36A2.3) mRNA, complete cds. 11/11 None
F36A2.3 ENSEMBL cdna:known chromosome:CEL140:I:8806910:8809744:1 gene:F36A2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022847 4/11 Cross Hyb Matching Probes None
SNAP00000022843 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004940 7/11 Cross Hyb Matching Probes None
SNAP00000004918 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8806871-8809642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A2.3
Entrez Gene 172690 Entrez gene
SwissProt O62128 EMBL-EBI
WormBase CE15964 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03073 Hypothetical protein F36A2.3 [Caenorhabditis elegans] emb|CAB09417.1| Hypothetical protein F36A2.3 [Caenorhabditis elegans] ref|NP_492378.1| F36A2.3 [Caenorhabditis elegans] 0.0
blast CAE66974 Hypothetical protein CBG12370 [Caenorhabditis briggsae] 0.0
blast CAE59707 Hypothetical protein CBG03139 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003767 EMBL-EBI Malate/L-lactate dehydrogenase 3.0E-80
Sequence
Target Sequence 
>C. ELEGANS:178259_AT
atttgtatggctgcacctggaatggaaggagattcgttctttttggatatggcttcgact
actgtagcttacggaaaaattgaagttgttgatcgtaaaggagaaacgtatattcctgga
agctggggtgctgataaaaatggagatgagacacataatccaaaggaagttcttgatgga
ggtggtcttcaaccattgggaggatctgagatcactggaggatataaaggaactggactt
tgtatgatggttgaagttctttgtggtattatgggtggttcagcattcggaaaaaacatt
cgtcaatggcagacaactagtaaaacagcggacttgggacaatgttttgttgccatcgac
ccagagtgctttgctccaggattttccaatcgtcttcaagaattctgtgatgaaactcgc
aaccttaacccaataaacccatcaagaccaccacaagtacctggagatccagagagagct
cacatgaatatgtgtgatgatttgggaggaattgtttataaaaagaaacaacttgatcat
ttgaaaaatcttgcggatcgccttggcgtcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGTATGGCTGCACCTGGAATGG 652 15 529 Antisense
GTTCTTTTTGGATATGGCTTCGACT 28 441 564 Antisense
GGCTTCGACTACTGTAGCTTACGGA 278 535 579 Antisense
GGAGGTGGTCTTCAACCATTGGGAG 352 515 706 Antisense
GACAATGTTTTGTTGCCATCGACCC 14 365 866 Antisense
CAGAGTGCTTTGCTCCAGGATTTTC 581 203 890 Antisense
GCTCCAGGATTTTCCAATCGTCTTC 704 297 901 Antisense
TGTGATGAAACTCGCAACCTTAACC 448 549 934 Antisense
TAACCCAATAAACCCATCAAGACCA 141 639 954 Antisense
ATCAAGACCACCACAAGTACCTGGA 78 27 969 Antisense
TCTTGCGGATCGCCTTGGCGTCATA 348 617 1077 Antisense
Sequence Source Affymetrix Proprietary Database