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[178258_at]

Description K01A6.6 /REP_DB=WormBase Gene ID /WP=CE06039 /TR=Q21077 /GB=CAA92967.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 107.1
(3)
P 		30.2
(-2.3)
A 		20.8
(-3)
A 		49.7
(-1)
A 		86
B 89.3
(3)
P 		51.8
(-0.2)
A 		19.9
(-3)
A 		59.1
(0.4)
A 		69
C 82.2
(3)
P 		45.9
(-0.2)
A 		15
(-3)
A 		78.9
(2.7)
A 		67
avr 92.9
(3) 		42.6
(-1.1) 		18.6
(-3) 		62.6
(0.6) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 63.1
(3)
P 		58.3
(2.5)
A 		59.4
(2.6)
A 		54.4
(2)
A 		8.7
(-3)
A 		34.2
(-0.2)
A 		54
B 93.5
(3)
A 		78.2
(1.5)
A 		49.1
(-1.4)
P 		55.6
(-0.8)
A 		50.9
(-1.2)
A 		33
(-3)
A 		61
C 106.6
(3)
P 		95.2
(2.3)
P 		51.1
(-0.2)
A 		6.2
(-2.9)
A 		28.2
(-1.6)
A 		3.7
(-3)
A 		103
avr 87.7
(3) 		77.2
(2) 		53.2
(-0.2) 		38.7
(-1.6) 		29.3
(-2.5) 		23.6
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 39
(3)
P 		6.5
(-2.8)
A 		5.4
(-3)
A 		7.3
(-2.7)
A 		34
B 28.5
(3)
P 		12.8
(-0.9)
A 		4.6
(-3)
A 		12.6
(-1)
A 		24
C 27.2
(3)
P 		13.2
(-0.8)
A 		5.2
(-3)
A 		13.3
(-0.8)
A 		22
avr 31.6
(3) 		10.8
(-1.7) 		5.1
(-3) 		11.1
(-1.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 11.6
(-0)
P 		20.7
(3)
A 		12.9
(0.4)
A 		13.8
(0.7)
A 		2.6
(-3)
A 		8.3
(-1.1)
A 		18
B 32.5
(3)
A 		26
(1.1)
A 		11.9
(-3)
P 		14.7
(-2.2)
A 		20.7
(-0.4)
A 		12.3
(-2.9)
A 		21
C 39.5
(3)
P 		29
(1.4)
P 		13
(-1.2)
A 		1.2
(-3)
A 		9.1
(-1.8)
A 		1.3
(-3)
A 		38
avr 27.9
(3) 		25.2
(2.2) 		12.6
(-1.5) 		9.9
(-2.2) 		10.8
(-2) 		7.3
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9765
Sequence Type Exemplar sequence
Representative Public ID K01A6.6 NCBI
Target Description K01A6.6 /REP_DB=WormBase Gene ID /WP=CE06039 /TR=Q21077 /GB=CAA92967.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069821 NCBI Caenorhabditis elegans K01A6.6 (K01A6.6) mRNA, complete cds. 11/11 None
K01A6.6 ENSEMBL cdna:known chromosome:CEL140:IV:11735295:11742234:1 gene:K01A6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040613 3/11 Cross Hyb Matching Probes None
GENEFINDER00000040621 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11735354-11736838(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A6.6
Entrez Gene 3565516 Entrez gene
SwissProt Q21077 EMBL-EBI
WormBase CE37389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92967 Hypothetical protein K01A6.6 [Caenorhabditis elegans] ref|NP_502222.2| K01A6.6 [Caenorhabditis elegans] 0.0
blast CAE62064 Hypothetical protein CBG06085 [Caenorhabditis briggsae] 1.0E-144
blast CAE62063 Hypothetical protein CBG06081 [Caenorhabditis briggsae] 3.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502222.2 7 72-94,115-137,162-184,203-220,268-287,318-340,360-382
K01A6.6 7 72-94,115-137,162-184,203-220,268-287,318-340,360-382
Sequence
Target Sequence 
>C. ELEGANS:178258_AT
ggtcgtcttaacaatggctggtcacatatggctgtatatggattcgcgtatccaatgatt
ctcctgatgcttattgcacctttatgtgcagtcatgttaggaatgggaaaacgagagaaa
cgagaaggagatcgaagatttccaaatccactttaccaaatgatctggttattaacattt
tgtggatggctcagtgttctctcacctcttcccttcactgtatggtactatttcgtaggt
gaaggcacacgatcattaaatcaatcgattgccatgtgtcatttatttcgaacttcaatg
gaaacaataccacatatgacagacacaatgatgactttattttcggtgctgctggccgct
gcaagatttctaactcaatatcatcgaaatacactgaaacttcgaacggtcgaacgattt
tcaagagctatttgggtcattatttttgtatgtgtcacactggcgattttgaggtttttc
gagcacgacacaaaagtataccagttttgtatggatactgaaccaacacctcaatgggct
gggcgatgtatggttcgagatggcgctctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGTCTTAACAATGGCTGGTCAC 365 503 193 Antisense
GATTCGCGTATCCAATGATTCTCCT 257 433 233 Antisense
GATTCTCCTGATGCTTATTGCACCT 149 433 249 Antisense
TGTGGATGGCTCAGTGTTCTCTCAC 474 555 373 Antisense
CTCTTCCCTTCACTGTATGGTACTA 494 227 398 Antisense
AATCAATCGATTGCCATGTGTCATT 505 171 451 Antisense
GATGACTTTATTTTCGGTGCTGCTG 66 413 522 Antisense
TGGCCGCTGCAAGATTTCTAACTCA 268 545 545 Antisense
GATTTTGAGGTTTTTCGAGCACGAC 390 429 657 Antisense
GAACCAACACCTCAATGGGCTGGGC 521 343 712 Antisense
GTATGGTTCGAGATGGCGCTCTGAT 649 453 740 Antisense
Sequence Source Affymetrix Proprietary Database