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[178257_at]

Description K10C3.4 /REP_DB=WormBase Gene ID /WP=CE12080 /TR=O45665 /GB=CAB05771.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 395.7
(3)
P 		170.8
(-1.7)
A 		111.6
(-3)
A 		176.7
(-1.6)
P 		284
B 311
(3)
P 		187.5
(-1.6)
A 		150.6
(-3)
A 		164.5
(-2.5)
P 		160
C 367.8
(3)
P 		179.3
(-1.7)
A 		125.6
(-3)
A 		250.3
(0.1)
M 		242
avr 358.2
(3) 		179.2
(-1.7) 		129.3
(-3) 		197.2
(-1.2) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 224.4
(3)
P 		182
(1.5)
P 		85
(-1.8)
A 		113
(-0.9)
A 		51
(-3)
A 		200.4
(2.2)
P 		173
B 186.3
(3)
P 		113.3
(-0.3)
A 		106.7
(-0.6)
A 		104.2
(-0.8)
M 		55.3
(-3)
A 		125
(0.2)
M 		131
C 361.2
(3)
P 		147
(-1.7)
A 		107.4
(-2.5)
A 		90.2
(-2.9)
A 		86.8
(-3)
A 		157
(-1.5)
P 		274
avr 257.3
(3) 		147.4
(-0.4) 		99.7
(-1.9) 		102.5
(-1.8) 		64.4
(-3) 		160.8
(-0) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 144.1
(3)
P 		37.1
(-2.4)
A 		29.2
(-2.8)
A 		25.9
(-3)
P 		118
B 99.2
(3)
P 		46.3
(-1.9)
A 		34.9
(-3)
A 		35.1
(-3)
P 		64
C 121.7
(3)
P 		51.6
(-2.3)
A 		43.8
(-2.9)
A 		42.2
(-3)
M 		80
avr 121.7
(3) 		45
(-2.3) 		36
(-2.9) 		34.4
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 41.4
(0.2)
P 		64.7
(3)
P 		18.5
(-2.6)
A 		28.7
(-1.4)
A 		15.4
(-3)
A 		48.8
(1.1)
P 		49
B 64.8
(3)
P 		37.7
(-0.8)
A 		25.9
(-2.5)
A 		27.6
(-2.3)
M 		22.5
(-3)
A 		46.6
(0.4)
M 		42
C 133.9
(3)
P 		44.9
(-1.6)
A 		27.3
(-2.5)
A 		18.1
(-3)
A 		28.1
(-2.5)
A 		52.5
(-1.2)
P 		116
avr 80
(3) 		49.1
(-0.2) 		23.9
(-2.8) 		24.8
(-2.7) 		22
(-3) 		49.3
(-0.2) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1769
Sequence Type Exemplar sequence
Representative Public ID K10C3.4 NCBI
Target Description K10C3.4 /REP_DB=WormBase Gene ID /WP=CE12080 /TR=O45665 /GB=CAB05771.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060209 NCBI Caenorhabditis elegans K10C3.4 (K10C3.4) mRNA, complete cds. 11/11 None
SNAP00000018523 ENSEMBL cdna:SNAP chromosome:CEL140:I:9868624:9869803:1 10/11 None
GENEFINDER00000018529 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9868624:9870420:1 11/11 None
K10C3.4 ENSEMBL cdna:known chromosome:CEL140:I:9868624:9871604:1 gene:K10C3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9868554-9870351(+) 97.12 100.0
Public Domain and Genome References
Gene Title
Ensembl K10C3.4
Entrez Gene 187255 Entrez gene
SwissProt O45665 EMBL-EBI
WormBase CE12080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05771 Hypothetical protein K10C3.4 [Caenorhabditis elegans] ref|NP_492610.1| K10C3.4 [Caenorhabditis elegans] 1.0E-151
blast CAB05771 Hypothetical protein K10C3.4 [Caenorhabditis elegans] ref|NP_492610.1| K10C3.4 [Caenorhabditis elegans] 1.0E-148
blast CAE60265 Hypothetical protein CBG03842 [Caenorhabditis briggsae] 1.0E-115
blast CAE60265 Hypothetical protein CBG03842 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492610.1 1 4-26
K10C3.4 1 4-26
SNAP00000018523 1 4-26
GENEFINDER00000018529 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:178257_AT
gctggtcactatacttgccgtatacacttttggatgcaaaatataaggaattgatgcaga
agccattgaatgaaatgaatcttcatctagtaacaatcagaactgcagcacatcttgttt
ctatggcagaaaaaggtgcagaagataagcttaatatcgtcgatttgaaagatcatttga
tgcgaatgcgacgtcaaatccggggagatatgttgcttgatgatgattatgagacagaag
atgacttggatgatgtagaagaagttgatgacgaggcacatgatccagatggacttgttg
tcaaaaataaaatcggaaaagatcatgaaaagatcccgttggtcgagtcagaagcaataa
ttgatatgatcgagttgaccagagtccccgtcgtcgagcaagaacaactcttgaagagca
acggtgtatctgatcaaaaacatacaccaattctacatcttcactatcatcatcatcatc
ctcatcacatgaccaatggatcgttgaatactgttgaagagatcaatgaggatgatcatc
acggagaaggaacttcaacgtcatgttcttcgtcatcgacatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGTCACTATACTTGCCGTATAC 392 295 497 Antisense
GCAGCACATCTTGTTTCTATGGCAG 681 311 601 Antisense
AATGCGACGTCAAATCCGGGGAGAT 125 167 681 Antisense
GACGAGGCACATGATCCAGATGGAC 390 379 766 Antisense
AGATCCCGTTGGTCGAGTCAGAAGC 617 65 827 Antisense
TGATCGAGTTGACCAGAGTCCCCGT 198 565 863 Antisense
TCCCCGTCGTCGAGCAAGAACAACT 343 595 881 Antisense
ACATACACCAATTCTACATCTTCAC 40 107 936 Antisense
TACATCTTCACTATCATCATCATCA 295 645 950 Antisense
CATCATCCTCATCACATGACCAATG 522 213 970 Antisense
TCATGTTCTTCGTCATCGACATCTT 69 623 1057 Antisense
Sequence Source Affymetrix Proprietary Database