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[178255_at]

Description K08H2.7 /REP_DB=WormBase Gene ID /WP=CE06165 /TR=Q21371 /GB=CAA94153.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 9.5
(-3)
A 		60.4
(3)
A 		11.5
(-2.8)
A 		52.6
(2.1)
A 		51
B 8.5
(-3)
A 		30.3
(-0.7)
A 		64.5
(3)
A 		45
(0.9)
A 		56
C 44
(-1.1)
A 		5.5
(-3)
A 		28.2
(-1.9)
A 		127
(3)
A 		122
avr 20.7
(-3) 		32.1
(-1.7) 		34.7
(-1.5) 		74.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 10
(-3)
A 		64.5
(-1.5)
A 		234.8
(3)
P 		131.6
(0.2)
P 		105.3
(-0.5)
A 		34.1
(-2.4)
A 		225
B 58.8
(-2.4)
A 		74.4
(-1.8)
A 		209.8
(3)
P 		129.7
(0.1)
P 		118.9
(-0.3)
M 		42.1
(-3)
A 		168
C 69.3
(-2)
A 		75.5
(-1.6)
A 		141.1
(3)
P 		105
(0.5)
A 		54.7
(-3)
A 		58.6
(-2.7)
A 		86
avr 46
(-3) 		71.5
(-1.9) 		195.2
(3) 		122.1
(0.1) 		93
(-1.1) 		44.9
(-3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.5
(-2.7)
A 		13.1
(3)
A 		3
(-3)
A 		7.7
(-0.2)
A 		10
B 2.7
(-3)
A 		7.5
(-0.7)
A 		15
(3)
A 		9.6
(0.4)
A 		12
C 14.6
(0.9)
A 		1.6
(-3)
A 		9.8
(-0.5)
A 		21.4
(3)
A 		20
avr 6.9
(-3) 		7.4
(-2.5) 		9.3
(-0.6) 		12.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.9
(-3)
A 		22.9
(-0.4)
A 		51.1
(3)
P 		33.4
(0.8)
P 		31.8
(0.6)
A 		8.3
(-2.2)
A 		49
B 20.4
(-2.2)
A 		24.8
(-1.4)
A 		50.9
(3)
P 		34.3
(0.2)
P 		48.3
(2.6)
M 		15.7
(-3)
A 		35
C 25.7
(-0.4)
A 		23
(-1.3)
A 		35.9
(3)
P 		21.1
(-1.9)
A 		17.7
(-3)
A 		19.6
(-2.4)
A 		18
avr 16
(-2.7) 		23.6
(-1.3) 		46
(3) 		29.6
(-0.1) 		32.6
(0.4) 		14.5
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17777
Sequence Type Exemplar sequence
Representative Public ID K08H2.7 NCBI
Target Description K08H2.7 /REP_DB=WormBase Gene ID /WP=CE06165 /TR=Q21371 /GB=CAA94153.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077799 NCBI Caenorhabditis elegans K08H2.7 (K08H2.7) mRNA, complete cds. 11/11 None
GENEFINDER00000000978 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13247216:13248346:-1 11/11 None
K08H2.7 ENSEMBL cdna:known chromosome:CEL140:X:13247183:13248346:-1 gene:K08H2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13247182-13248346(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08H2.7
Entrez Gene 187177 Entrez gene
SwissProt Q21371 EMBL-EBI
WormBase CE06165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94153 Hypothetical protein K08H2.7 [Caenorhabditis elegans] ref|NP_510200.1| K08H2.7 [Caenorhabditis elegans] 9.0E-68
blast CAA94153 Hypothetical protein K08H2.7 [Caenorhabditis elegans] ref|NP_510200.1| K08H2.7 [Caenorhabditis elegans] 4.0E-62
blast CAE61406 Hypothetical protein CBG05269 [Caenorhabditis briggsae] 4.0E-37
Sequence
Target Sequence 
>C. ELEGANS:178255_AT
gtcgatcttttgggttcttacatacaatacggaattcgcacgcaagagcatagtatgctg
ttaggtttgaatagagaaaattgctcttcgaagtggaattggtggtctagattggagaat
aaaacaatcacagctggagtcgggaatcagtcagagccatgtgacattgtgcaaggggct
tttgtggggtttaacttggttcgaataactccttcgaatttcacaccgaccggcatttta
tgtcaatgcagtgaccaggtctctttcttgccagtggttaaaagtattgatacagcaaca
cggctcacgtttttcgcagaaatgttgcgctttcagacaactagccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATCTTTTGGGTTCTTACATAC 457 473 31 Antisense
TACGGAATTCGCACGCAAGAGCATA 507 647 58 Antisense
ACAATCACAGCTGGAGTCGGGAATC 113 115 154 Antisense
GTCGGGAATCAGTCAGAGCCATGTG 632 471 169 Antisense
TGTGCAAGGGGCTTTTGTGGGGTTT 66 557 198 Antisense
TAACTCCTTCGAATTTCACACCGAC 319 639 236 Antisense
CACACCGACCGGCATTTTATGTCAA 542 195 252 Antisense
TGCAGTGACCAGGTCTCTTTCTTGC 354 579 277 Antisense
GTCTCTTTCTTGCCAGTGGTTAAAA 121 467 289 Antisense
TACAGCAACACGGCTCACGTTTTTC 29 643 321 Antisense
GTTGCGCTTTCAGACAACTAGCCAA 58 441 354 Antisense
Sequence Source Affymetrix Proprietary Database