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[178252_at] 7TM receptor, srx family

Description F38B7.4 /REP_DB=WormBase Gene ID /WP=CE05828 /TR=Q20152 /GB=CAA98472.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 03      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 46.9
(-2.6)
A 		73.1
(-1.5)
A 		36
(-3)
A 		188.2
(3)
P 		152
B 55.5
(-0.6)
A 		28.1
(-3)
A 		46.2
(-1.4)
A 		97.8
(3)
A 		70
C 53.5
(-1.9)
A 		29.8
(-2.7)
A 		22.1
(-3)
A 		198.5
(3)
P 		176
avr 52
(-2.2) 		43.7
(-2.6) 		34.8
(-3) 		161.5
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 101.2
(3)
A 		38.3
(-1.1)
A 		96.8
(2.7)
A 		25.9
(-1.9)
A 		8.6
(-3)
A 		11.3
(-2.8)
A 		93
B 66.4
(3)
A 		56.5
(2)
A 		41.8
(0.5)
A 		40.7
(0.4)
A 		8.2
(-3)
A 		18.7
(-1.9)
A 		58
C 24.1
(-0.5)
A 		50.4
(3)
A 		10.2
(-2.3)
A 		5.1
(-3)
A 		39.9
(1.6)
A 		6.5
(-2.8)
A 		45
avr 63.9
(3) 		48.4
(1.2) 		49.6
(1.3) 		23.9
(-1.6) 		18.9
(-2.2) 		12.2
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.1
(-0.4)
A 		15.9
(-0.8)
A 		9.4
(-3)
A 		27.5
(3)
P 		18
B 17.7
(1.7)
A 		6.9
(-3)
A 		10.7
(-1.4)
A 		20.8
(3)
A 		14
C 17.7
(-0.7)
A 		8.6
(-2.8)
A 		7.7
(-3)
A 		33.5
(3)
P 		26
avr 17.5
(-0.3) 		10.5
(-2.6) 		9.3
(-3) 		27.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 18.7
(2.2)
A 		13.6
(0.6)
A 		21.1
(3)
A 		6.6
(-1.7)
A 		2.6
(-3)
A 		2.7
(-3)
A 		19
B 23.1
(3)
A 		18.8
(1.7)
A 		10.2
(-0.9)
A 		10.8
(-0.7)
A 		3.3
(-3)
A 		7
(-1.9)
A 		20
C 8.9
(0.3)
A 		15.4
(3)
A 		2.6
(-2.3)
A 		1
(-3)
A 		12.9
(2)
A 		2.2
(-2.5)
A 		14
avr 16.9
(3) 		15.9
(2.5) 		11.3
(0.4) 		6.1
(-2) 		6.3
(-1.9) 		4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14775
Sequence Type Exemplar sequence
Representative Public ID F38B7.4 NCBI
Target Description F38B7.4 /REP_DB=WormBase Gene ID /WP=CE05828 /TR=Q20152 /GB=CAA98472.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073529 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-85) (srx-85) mRNA, complete cds. 11/11 None
SNAP00000015623 ENSEMBL cdna:SNAP chromosome:CEL140:V:11556037:11556811:1 11/11 None
F38B7.4 ENSEMBL cdna:known chromosome:CEL140:V:11555268:11556811:1 gene:F38B7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015630 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11556018-11556811(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-85
Ensembl F38B7.4
Entrez Gene 185457 Entrez gene
SwissProt Q20152 EMBL-EBI
WormBase CE36299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98472 Hypothetical protein F38B7.4 [Caenorhabditis elegans] ref|NP_505930.2| Serpentine Receptor, class X family member (srx-85) [Caenorhabditis elegans] 0.0
blast CAE75343 Hypothetical protein CBG23323 [Caenorhabditis briggsae] 1.0E-150
blast CAA98472 Hypothetical protein F38B7.4 [Caenorhabditis elegans] ref|NP_505930.2| Serpentine Receptor, class X family member (srx-85) [Caenorhabditis elegans] 1.0E-123
blast CAE75343 Hypothetical protein CBG23323 [Caenorhabditis briggsae] 1.0E-103
blast CAE75341 Hypothetical protein CBG23321 [Caenorhabditis briggsae] 3.0E-78
blast CAE75341 Hypothetical protein CBG23321 [Caenorhabditis briggsae] 9.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 5.0E-62
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.0E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505930.2 7 22-44,65-84,111-133,153-172,192-214,234-256,266-288
F38B7.4 7 22-44,65-84,111-133,153-172,192-214,234-256,266-288
SNAP00000015623 5 20-42,54-71,86-108,128-150,160-182
Sequence
Target Sequence 
>C. ELEGANS:178252_AT
ctacatcctctactacgtcgaatatttatcttggctcccagatttttccccgcaatgctc
tggtaacagcggaattctacttttcatggctgtcaatttcgctatcgtgtcagtgatcaa
cgtggcaacttttgccaaaatattcaagttttacaaaaatcaaaataaaactgacaagga
atcacgaaagcgaataaaaaagaatatttatcttttcattcaaacagtgctccaagattc
tctctacctcattgacatttcgttcactttttactttaattcgttctacgactatcggtt
ttggacgtttttctgtggaacctttgtatggcaatcgttacactcactggatggatttat
catgataatgttcaatgagcgactatcctttctcaaaaaacagctctttcaaccactggc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACATCCTCTACTACGTCGAATAT 382 227 210 Antisense
CGTCGAATATTTATCTTGGCTCCCA 6 247 225 Antisense
TTTCCCCGCAATGCTCTGGTAACAG 431 669 254 Antisense
GGAATTCTACTTTTCATGGCTGTCA 455 533 280 Antisense
GGCTGTCAATTTCGCTATCGTGTCA 260 541 297 Antisense
AAACAGTGCTCCAAGATTCTCTCTA 376 129 431 Antisense
TTCTCTCTACCTCATTGACATTTCG 30 693 447 Antisense
TGGACGTTTTTCTGTGGAACCTTTG 319 513 511 Antisense
TATGGCAATCGTTACACTCACTGGA 213 655 536 Antisense
TGTTCAATGAGCGACTATCCTTTCT 79 563 578 Antisense
AAAACAGCTCTTTCAACCACTGGCG 130 131 606 Antisense
Sequence Source Affymetrix Proprietary Database