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[178251_s_at]

Description T13F2.7 /REP_DB=WormBase Gene ID /WP=CE13631 /TR=Q94050 /GB=CAB03358.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 23      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 399.6
(3)
P 		266.7
(-2.5)
P 		254
(-3)
P 		391.6
(2.7)
P 		146
B 429.1
(3)
P 		264.9
(-2.1)
P 		236.3
(-3)
P 		347.8
(0.5)
P 		193
C 417.5
(3)
P 		275.8
(-3)
P 		318.8
(-1.2)
P 		363.8
(0.7)
P 		142
avr 415.4
(3) 		269.1
(-3) 		269.7
(-3) 		367.7
(1) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 416
(-2.4)
P 		378
(-3)
P 		445.5
(-1.9)
P 		504
(-0.9)
P 		496.4
(-1)
P 		738
(3)
P 		360
B 350.5
(-2.7)
P 		327.7
(-3)
P 		541.3
(0.2)
P 		451.2
(-1.2)
P 		461.4
(-1)
P 		730.7
(3)
P 		403
C 357.1
(-3)
P 		411.3
(-2.3)
P 		455.5
(-1.7)
P 		482.9
(-1.4)
P 		398.8
(-2.5)
P 		816.2
(3)
P 		459
avr 374.5
(-3) 		372.3
(-3) 		480.8
(-1.3) 		479.4
(-1.3) 		452.2
(-1.8) 		761.6
(3) 		389
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 145.5
(3)
P 		57.9
(-3)
P 		66.4
(-2.4)
P 		57.3
(-3)
P 		88
B 136.8
(3)
P 		65.4
(-2.2)
P 		54.8
(-3)
P 		74.1
(-1.6)
P 		82
C 138.2
(3)
P 		79.3
(-1.6)
P 		111.1
(0.9)
P 		61.3
(-3)
P 		77
avr 140.2
(3) 		67.5
(-2.7) 		77.4
(-2) 		64.2
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 76.7
(-3)
P 		134.4
(0.4)
P 		97
(-1.8)
P 		127.8
(-0)
P 		149.8
(1.3)
P 		179.7
(3)
P 		103
B 121.9
(-2.5)
P 		109.1
(-3)
P 		131.5
(-2.2)
P 		119.5
(-2.6)
P 		187.5
(-0.1)
P 		272.5
(3)
P 		163
C 132.4
(-1.8)
P 		125.5
(-2)
P 		115.9
(-2.4)
P 		97.1
(-3)
P 		129
(-1.9)
P 		273.2
(3)
P 		176
avr 110.3
(-3) 		123
(-2.4) 		114.8
(-2.8) 		114.8
(-2.8) 		155.4
(-0.9) 		241.8
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178251_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8466
Sequence Type Exemplar sequence
Representative Public ID T13F2.7 NCBI
Target Description T13F2.7 /REP_DB=WormBase Gene ID /WP=CE13631 /TR=Q94050 /GB=CAB03358.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069343 NCBI Caenorhabditis elegans T13F2.7 (T13F2.7) mRNA, complete cds. 11/11 None
SNAP00000043477 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9774774:9777600:-1 11/11 None
GENEFINDER00000043490 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9774774:9777600:-1 11/11 None
T13F2.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:9774577:9777608:-1 gene:T13F2.7 11/11 None
T13F2.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:9774577:9777641:-1 gene:T13F2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9774779-9777606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13F2.7
Entrez Gene 177816 Entrez gene
SwissProt Q94050 EMBL-EBI
WormBase CE13631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03358 Hypothetical protein T13F2.7 [Caenorhabditis elegans] ref|NP_501744.1| T13F2.7 [Caenorhabditis elegans] 0.0
blast CAE69014 Hypothetical protein CBG15011 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178251_S_AT
agaaacagtggaaccttctccgactcttgcagctgttaaacgtattcttgatgaaggtga
aatagattcagatgaagagaaacagcaagcgagtaaaagcaaaaagaaaaagccagctac
atcagactcttcggattcaacatcatcatcttctgaagaagatttcgatgggcctgttga
tgcgagaaaaagacgaaagctgcgaagaaagaaggatcgcaagaatccacgtactacaac
ggcttcgtcgttattggatccaacattccgtcaaatgtttgaaaatcggaaaactatttt
ggcacaaatgactccagcacataaatcagcgttcgttagtgcactgactcagatagtaaa
taacaatccatccggagtatctcaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAACAGTGGAACCTTCTCCGACT 676 71 1572 Antisense
TTCTCCGACTCTTGCAGCTGTTAAA 609 693 1587 Antisense
AAAAGCCAGCTACATCAGACTCTTC 35 133 1679 Antisense
CAGACTCTTCGGATTCAACATCATC 580 205 1694 Antisense
AGATTTCGATGGGCCTGTTGATGCG 500 65 1731 Antisense
GAATCCACGTACTACAACGGCTTCG 85 329 1794 Antisense
CGGCTTCGTCGTTATTGGATCCAAC 353 241 1811 Antisense
ATTTTGGCACAAATGACTCCAGCAC 478 13 1867 Antisense
GACTCCAGCACATAAATCAGCGTTC 345 373 1881 Antisense
CAGCGTTCGTTAGTGCACTGACTCA 156 203 1898 Antisense
CAATCCATCCGGAGTATCTCAAGCC 389 181 1935 Antisense
Sequence Source Affymetrix Proprietary Database