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[178250_at]

Description M01E5.1 /REP_DB=WormBase Gene ID /WP=CE12274 /TR=O17964 /GB=CAB07638.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 8.9
(-3)
A 		23.2
(-1.2)
A 		27.2
(-0.7)
A 		57.4
(3)
A 		49
B 9.9
(-1.9)
A 		25
(0.9)
A 		4.4
(-3)
A 		35.8
(3)
A 		31
C 4.3
(-3)
A 		12.9
(3)
A 		6.9
(-1.2)
A 		10.3
(1.2)
A 		9
avr 7.7
(-3) 		20.4
(-0.2) 		12.8
(-1.9) 		34.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 13.1
(-2.4)
A 		13.6
(-2.4)
A 		38.3
(1)
A 		10
(-2.9)
A 		52.9
(3)
A 		9
(-3)
A 		44
B 7.7
(-2)
A 		11.6
(-1.3)
A 		2.2
(-3)
A 		13.2
(-1)
A 		21
(0.5)
A 		34.7
(3)
A 		33
C 4.4
(-3)
A 		26
(-0.2)
A 		14.6
(-1.7)
A 		49.9
(3)
A 		7.6
(-2.6)
A 		9.5
(-2.3)
A 		46
avr 8.4
(-3) 		17.1
(-0.2) 		18.4
(0.2) 		24.4
(2.1) 		27.2
(3) 		17.7
(-0) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.2
(-3)
A 		5
(-0.9)
A 		7.1
(1.5)
A 		8.4
(3)
A 		5
B 3.2
(-1)
A 		6.2
(1.7)
A 		1
(-3)
A 		7.6
(3)
A 		7
C 1.4
(-3)
A 		3.7
(3)
A 		2.4
(-0.4)
A 		1.7
(-2.2)
A 		2
avr 2.6
(-3) 		5
(1.4) 		3.5
(-1.4) 		5.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.4
(-2.9)
A 		4.8
(-1.9)
A 		8.3
(-0.3)
A 		2.5
(-2.9)
A 		16
(3)
A 		2.2
(-3)
A 		14
B 2.7
(-1.9)
A 		3.9
(-1.4)
A 		0.5
(-3)
A 		3.5
(-1.5)
A 		8.5
(0.9)
A 		12.9
(3)
A 		12
C 1.6
(-3)
A 		7.9
(1.5)
A 		3.7
(-1.5)
A 		10
(3)
A 		2.4
(-2.4)
A 		3.2
(-1.9)
A 		8
avr 2.2
(-3) 		5.5
(-0.1) 		4.2
(-1.2) 		5.3
(-0.3) 		9
(3) 		6.1
(0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.556
Sequence Type Exemplar sequence
Representative Public ID M01E5.1 NCBI
Target Description M01E5.1 /REP_DB=WormBase Gene ID /WP=CE12274 /TR=O17964 /GB=CAB07638.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060932 NCBI Caenorhabditis elegans M01E5.1 (M01E5.1) mRNA, complete cds. 11/11 None
SNAP00000016097 ENSEMBL cdna:SNAP chromosome:CEL140:I:13282230:13284534:1 9/11 None
M01E5.1 ENSEMBL cdna:known chromosome:CEL140:I:13281051:13283630:1 gene:M01E5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016134 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13282445-13283561(+) 98.3 98.3
Public Domain and Genome References
Gene Title
Ensembl M01E5.1
Entrez Gene 187369 Entrez gene
SwissProt O17964 EMBL-EBI
WormBase CE12274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07638 Hypothetical protein M01E5.1 [Caenorhabditis elegans] ref|NP_493333.1| M01E5.1 [Caenorhabditis elegans] 0.0
blast CAB07638 Hypothetical protein M01E5.1 [Caenorhabditis elegans] ref|NP_493333.1| M01E5.1 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000016097 1 381-403
Sequence
Target Sequence 
>C. ELEGANS:178250_AT
ttataagttctgattcccctttccaggatgggatctatatcaaacaagcgacaacgcgag
tctcctcaaatcatgttgtacaagcgaatgttctgcaaatgagtactgtgggaaaatccg
gaacccgagaatgtgctttctgcgtgagcttgaacaaacatgctttaagtaaaaaaggaa
aattttcagacccattcgccaatcgcgacgggttcaagcccttgtatctgcaatttcaag
acaattatgatctggaagtcggccagttgtgtcgaacccaacgggattgtttcaatactg
caacattttgtcaggcacctcttcagtatggaaatatgacccttggagtgtgcacaccga
ttgttggctccttgattcgctccgctggtgcccgggaagctttctttgttgagaattccc
aaggtggatgtaccagcgatgaacagtgtgatgagcttgggatgaagtggttctcctatc
aatgcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATAAGTTCTGATTCCCCTTTCCA 59 667 392 Antisense
ACAACGCGAGTCTCCTCAAATCATG 286 113 442 Antisense
GAATGTGCTTTCTGCGTGAGCTTGA 31 333 520 Antisense
CATTCGCCAATCGCGACGGGTTCAA 124 217 584 Antisense
GTTCAAGCCCTTGTATCTGCAATTT 57 445 603 Antisense
GGAAGTCGGCCAGTTGTGTCGAACC 36 533 645 Antisense
TGTCAGGCACCTCTTCAGTATGGAA 616 557 700 Antisense
ATATGACCCTTGGAGTGTGCACACC 267 19 725 Antisense
GAGTGTGCACACCGATTGTTGGCTC 446 401 737 Antisense
TGCCCGGGAAGCTTTCTTTGTTGAG 155 583 780 Antisense
GAAGTGGTTCTCCTATCAATGCGAA 559 335 855 Antisense
Sequence Source Affymetrix Proprietary Database