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[178248_at]

Description C07E3.3 /REP_DB=WormBase Gene ID /WP=CE02119 /TR=Q17786 /GB=CAA90094.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 98      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 97      6grp_total > 95      4grp_total > 23      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 875.9
(3)
P 		559.5
(-3)
P 		665.9
(-1)
P 		652.2
(-1.2)
P 		316
B 571.4
(-2.3)
P 		680.3
(0.9)
P 		549.2
(-3)
P 		751.6
(3)
P 		202
C 777
(3)
P 		483.3
(-3)
P 		541.6
(-1.8)
P 		653.8
(0.5)
P 		294
avr 741.4
(3) 		574.4
(-3) 		585.6
(-2.6) 		685.9
(1) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1162
1 2 3 4 5 6 range
A 815.8
(-1)
P 		639.8
(-2.2)
P 		517.4
(-3)
P 		1124.7
(1)
P 		1274.5
(2)
P 		1420.2
(3)
P 		903
B 733.6
(-1.8)
P 		502.1
(-3)
P 		568.7
(-2.6)
P 		966.6
(-0.5)
P 		1514
(2.4)
P 		1628.8
(3)
P 		1127
C 868.7
(-0.6)
P 		467.1
(-3)
P 		586.6
(-2.3)
P 		1048.1
(0.5)
P 		1477.4
(3)
P 		1358.6
(2.3)
P 		1010
avr 806
(-1.3) 		536.3
(-3) 		557.6
(-2.9) 		1046.5
(0.3) 		1422
(2.7) 		1469.2
(3) 		933
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 318.9
(3)
P 		121.5
(-2.3)
P 		174.1
(-0.9)
P 		95.5
(-3)
P 		223
B 182.2
(3)
P 		168
(1.4)
P 		127.3
(-3)
P 		160.2
(0.6)
P 		55
C 257.2
(3)
P 		139
(-1.8)
P 		188.8
(0.2)
P 		110.2
(-3)
P 		147
avr 252.8
(3) 		142.8
(-2) 		163.4
(-1.1) 		122
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 150.4
(-2.2)
P 		227.6
(-0.5)
P 		112.7
(-3)
P 		285.2
(0.8)
P 		384.6
(3)
P 		345.8
(2.1)
P 		272
B 255.3
(-1.5)
P 		167.1
(-2.6)
P 		138.1
(-3)
P 		256
(-1.5)
P 		615.1
(3)
P 		607.4
(2.9)
P 		477
C 322
(0.2)
P 		142.5
(-3)
P 		149.3
(-2.9)
P 		210.8
(-1.8)
P 		478.1
(3)
P 		454.8
(2.6)
P 		336
avr 242.6
(-1.2) 		179.1
(-2.2) 		133.4
(-3) 		250.7
(-1) 		492.6
(3) 		469.3
(2.6) 		359
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3393
Sequence Type Exemplar sequence
Representative Public ID C07E3.3 NCBI
Target Description C07E3.3 /REP_DB=WormBase Gene ID /WP=CE02119 /TR=Q17786 /GB=CAA90094.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063829
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023200 ENSEMBL cdna:SNAP chromosome:CEL140:II:10353668:10357412:-1 11/11 None
GENEFINDER00000023205 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10353668:10357412:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063829 7/11 Cross Hyb Matching Probes None
C07E3.3 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10353664-10357409(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59380 Hypothetical protein CBG02733 [Caenorhabditis briggsae] 1.0E-177
blast CAA90094 Hypothetical protein C07E3.3 [Caenorhabditis elegans] ref|NP_496230.2| C07E3.3 [Caenorhabditis elegans] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:178248_AT
atcagttaccgtcgtcgtagaccattgagtatacatgtccccgcagagtccaaatcctcc
accataatttctatctacagtaaccccatcgatgatgttccaccaacacatgtctccgaa
ctacacgccgagaagcgaatgatcgttggaatcgatgacgagttgcagccagagaagaac
aacgtgacatacgtaactgtagctactgctgcaatcgataatgaactacttcatcgtcat
ccagaagttggaagacatccagtctacgtgcttccagctcaaacaagctacggagcttct
gccaaaagaagatcgtctgatgacgaggcaaagaatgtgttgccgccacagaactgcaca
gtggagcactgtacacacgtggcggttaatgatggaagtcctgtagtgataagaaaaaga
gccagtcaagattccatcagagataaggaaaaccgcctaacaattcccatcaacgaggac
gacacggaaaacgtcggagagggtacaaattatcaaaatgtctcgaaaaagtgctttgaa
gagagactccactacgattcgtacatgccaacgctttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGTTACCGTCGTCGTAGACCAT 347 23 2950 Antisense
ACCATTGAGTATACATGTCCCCGCA 662 85 2970 Antisense
AATCCTCCACCATAATTTCTATCTA 37 169 3002 Antisense
TTCTATCTACAGTAACCCCATCGAT 523 689 3018 Antisense
ATGATGTTCCACCAACACATGTCTC 612 45 3041 Antisense
TGTCTCCGAACTACACGCCGAGAAG 565 555 3060 Antisense
TGAACTACTTCATCGTCATCCAGAA 290 573 3171 Antisense
GAAGACATCCAGTCTACGTGCTTCC 695 339 3200 Antisense
AGTGGAGCACTGTACACACGTGGCG 277 59 3309 Antisense
AAGAGAGACTCCACTACGATTCGTA 402 153 3488 Antisense
GATTCGTACATGCCAACGCTTTCAT 304 433 3505 Antisense
Sequence Source Affymetrix Proprietary Database