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[178246_at]

Description F49H6.8 /REP_DB=WormBase Gene ID /WP=CE18717 /TR=Q9XV07 /GB=CAB04437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 8.3
(-3)
A 		22
(3)
A 		9.1
(-2.6)
A 		9.8
(-2.3)
A 		14
B 32.1
(3)
A 		19.6
(-0.6)
A 		14.2
(-2.2)
A 		11.3
(-3)
A 		21
C 8.4
(-2.9)
A 		15.9
(-1.5)
A 		8.1
(-3)
A 		39.5
(3)
A 		31
avr 16.3
(0.6) 		19.2
(2.4) 		10.5
(-3) 		20.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 32.9
(3)
A 		20.4
(-0.7)
A 		14.1
(-2.5)
A 		32.2
(2.8)
A 		12.5
(-3)
A 		27.5
(1.4)
A 		20
B 12.4
(3)
A 		8.5
(0.8)
A 		1.6
(-3)
A 		2.3
(-2.6)
A 		10.9
(2.2)
A 		6.4
(-0.3)
A 		11
C 7.5
(-3)
A 		58
(3)
A 		7.4
(-3)
A 		43.6
(1.3)
A 		8.4
(-2.9)
A 		7.8
(-3)
A 		51
avr 17.6
(-0.2) 		29
(3) 		7.7
(-3) 		26
(2.2) 		10.6
(-2.2) 		13.9
(-1.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3
(-0.2)
A 		4.8
(3)
A 		2.4
(-1.2)
A 		1.4
(-3)
A 		3
B 10.2
(3)
A 		4.8
(-1.2)
A 		3.3
(-2.3)
A 		2.4
(-3)
A 		8
C 2.8
(-3)
A 		4.6
(-0.2)
A 		2.8
(-3)
A 		6.7
(3)
A 		4
avr 5.3
(3) 		4.7
(1.6) 		2.8
(-3) 		3.5
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.1
(0.5)
A 		7.3
(1.9)
A 		3.1
(-3)
A 		8.2
(3)
A 		3.8
(-2.2)
A 		6.7
(1.2)
A 		5
B 4.3
(2.9)
A 		2.8
(0.6)
A 		0.4
(-3)
A 		0.6
(-2.7)
A 		4.4
(3)
A 		2.4
(0)
A 		4
C 2.8
(-2.7)
A 		17.7
(3)
A 		1.9
(-3)
A 		8.8
(-0.4)
A 		2.7
(-2.7)
A 		2.6
(-2.7)
A 		16
avr 4.4
(-0.9) 		9.3
(3) 		1.8
(-3) 		5.9
(0.3) 		3.6
(-1.6) 		3.9
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13000
Sequence Type Exemplar sequence
Representative Public ID F49H6.8 NCBI
Target Description F49H6.8 /REP_DB=WormBase Gene ID /WP=CE18717 /TR=Q9XV07 /GB=CAB04437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074909 NCBI Caenorhabditis elegans F49H6.8 (F49H6.8) mRNA, complete cds. 11/11 None
SNAP00000000009 ENSEMBL cdna:SNAP chromosome:CEL140:V:17024948:17025241:-1 11/11 None
GENEFINDER00000000017 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17024627:17025241:-1 11/11 None
F49H6.8 ENSEMBL cdna:known chromosome:CEL140:V:17024948:17025241:-1 gene:F49H6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000011 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17024947-17025241(-) 98.98 100.0
Public Domain and Genome References
Gene Title
Ensembl F49H6.8
Entrez Gene 186075 Entrez gene
SwissProt Q9XV07 EMBL-EBI
WormBase CE18717 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04437 Hypothetical protein F49H6.8 [Caenorhabditis elegans] ref|NP_507310.1| F49H6.8 [Caenorhabditis elegans] 2.0E-49
blast CAB04437 Hypothetical protein F49H6.8 [Caenorhabditis elegans] ref|NP_507310.1| F49H6.8 [Caenorhabditis elegans] 7.0E-49
blast CAB04445 Hypothetical protein F49H6.12 [Caenorhabditis elegans] ref|NP_507309.1| F49H6.12 [Caenorhabditis elegans] 5.0E-13
blast CAB04445 Hypothetical protein F49H6.12 [Caenorhabditis elegans] ref|NP_507309.1| F49H6.12 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:178246_AT
cgaggaattctttttgcctgtcttctcgtcgttgtgaccaatcgtggagctactgctcaa
catgcaagaccgccagtaggagtaacaggagatgtcacgggagctcgcatagaccctccg
tcagacaaatgtgaaaacccttccgtcaacatcgcaactacggaggccccaaaaatcgtc
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGAATTCTTTTTGCCTGTCTTC 51 251 25 Antisense
TCTTCTCGTCGTTGTGACCAATCGT 151 617 45 Antisense
GTGACCAATCGTGGAGCTACTGCTC 359 483 58 Antisense
GCTACTGCTCAACATGCAAGACCGC 75 303 73 Antisense
GCAAGACCGCCAGTAGGAGTAACAG 459 321 88 Antisense
ACAGGAGATGTCACGGGAGCTCGCA 331 107 109 Antisense
ATGTCACGGGAGCTCGCATAGACCC 259 49 116 Antisense
CATAGACCCTCCGTCAGACAAATGT 38 215 132 Antisense
ATGTGAAAACCCTTCCGTCAACATC 481 33 153 Antisense
GTCAACATCGCAACTACGGAGGCCC 337 463 169 Antisense
TACGGAGGCCCCAAAAATCGTCACA 334 647 183 Antisense
Sequence Source Affymetrix Proprietary Database