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[178245_at]

Description T15D6.4 /REP_DB=WormBase Gene ID /WP=CE13686 /TR=O02320 /GB=CAB05626.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 18.6
(-2.6)
A 		27.7
(-1.7)
A 		14
(-3)
A 		77.5
(3)
A 		64
B 49.6
(-0.8)
A 		108
(3)
A 		15.8
(-3)
A 		26.5
(-2.3)
A 		92
C 34.1
(-3)
A 		52
(-1.7)
A 		52.3
(-1.7)
A 		115.5
(3)
A 		81
avr 34.1
(-2.1) 		62.6
(1.6) 		27.4
(-3) 		73.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 10
(-2)
A 		12.1
(-1.4)
A 		11.5
(-1.6)
A 		17.2
(-0.1)
A 		28.9
(3)
A 		6.2
(-3)
A 		23
B 39.6
(2.8)
A 		13.9
(-1.9)
A 		15.1
(-1.7)
A 		40.7
(3)
A 		22.8
(-0.3)
A 		7.9
(-3)
A 		33
C 11
(-1.8)
A 		13
(-1.3)
A 		13.3
(-1.2)
A 		11.2
(-1.7)
A 		29.1
(3)
A 		6.4
(-3)
A 		23
avr 20.2
(1) 		13
(-1.1) 		13.3
(-1.1) 		23
(1.8) 		26.9
(3) 		6.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 6.8
(-0.6)
A 		6
(-1.2)
A 		3.7
(-3)
A 		11.3
(3)
A 		8
B 15.8
(0.2)
A 		26.7
(3)
A 		3.7
(-3)
A 		5.6
(-2.5)
A 		23
C 11.3
(-3)
A 		15
(-0.3)
A 		18.2
(2)
A 		19.5
(3)
A 		8
avr 11.3
(-0.7) 		15.9
(3) 		8.5
(-3) 		12.1
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.9
(-2.7)
A 		4.3
(-0.7)
A 		2.5
(-2.2)
A 		4.4
(-0.6)
A 		8.7
(3)
A 		1.5
(-3)
A 		7
B 13.8
(3)
A 		4.6
(-2.1)
A 		3.7
(-2.6)
A 		10.8
(1.3)
A 		9.3
(0.5)
A 		2.9
(-3)
A 		11
C 4.1
(-1.4)
A 		4
(-1.4)
A 		3.4
(-1.9)
A 		2.2
(-2.9)
A 		9.4
(3)
A 		2.1
(-3)
A 		7
avr 6.6
(0.8) 		4.3
(-1.2) 		3.2
(-2.1) 		5.8
(0.1) 		9.1
(3) 		2.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.783
Sequence Type Exemplar sequence
Representative Public ID T15D6.4 NCBI
Target Description T15D6.4 /REP_DB=WormBase Gene ID /WP=CE13686 /TR=O02320 /GB=CAB05626.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060732 NCBI Caenorhabditis elegans T15D6.4 (T15D6.4) mRNA, complete cds. 11/11 None
T15D6.4 ENSEMBL cdna:known chromosome:CEL140:I:12382108:12384771:-1 gene:T15D6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012741 8/11 Cross Hyb Matching Probes None
GENEFINDER00000012757 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12382038-12384702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15D6.4
Entrez Gene 188531 Entrez gene
SwissProt O02320 EMBL-EBI
WormBase CE13686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05626 Hypothetical protein T15D6.4 [Caenorhabditis elegans] ref|NP_493133.1| T15D6.4 [Caenorhabditis elegans] 0.0
blast CAB05464 Hypothetical protein C54C8.2 [Caenorhabditis elegans] ref|NP_493157.1| C54C8.2 [Caenorhabditis elegans] 1.0E-119
blast CAB04495 Hypothetical protein F56H6.6 [Caenorhabditis elegans] ref|NP_493107.1| F56H6.6 [Caenorhabditis elegans] 6.0E-97
Sequence
Target Sequence 
>C. ELEGANS:178245_AT
tgaattccatcactcgttcttttttgttggccatcaaatacccaacttgtctgagtggtt
tgaaaattcttacgcatcagaagaaaccactgcatgggagattccatacacaggaagtga
ttgggaagttcaaataattcttcaccgcaacgacccatataacattgagtacttcccatc
gcgagtcagggatatgcagtctttgatttataaactctgccgtgcgaactacacattcaa
tttgctctctcacgtattcaatgttcacaaggggatcaaagaagatgatacaatgtactc
gaaagtcgtcactgctcacacaaagcaattttggaaaatgaggtatttatttttttgttg
tagagaattcccaagatatgcttgtgaatttacagaacgctttcccgttacactgccgaa
atcgacaagcagtacccagacactacaacaagataatttgccagatgtttccttattttt
ttcaggagtattcagaatgttcacgcaattctcgaaattttcagagcatttgaacatttt
taaagccggaaaagcgtactgttttgttgtttctgtcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTCCATCACTCGTTCTTTTTT 35 577 675 Antisense
AATACCCAACTTGTCTGAGTGGTTT 414 169 711 Antisense
CACCGCAACGACCCATATAACATTG 482 201 817 Antisense
TATAACATTGAGTACTTCCCATCGC 244 659 832 Antisense
GTACTTCCCATCGCGAGTCAGGGAT 237 459 843 Antisense
ATAAACTCTGCCGTGCGAACTACAC 174 25 884 Antisense
GTACTCGAAAGTCGTCACTGCTCAC 693 459 969 Antisense
TTACAGAACGCTTTCCCGTTACACT 289 683 1064 Antisense
GCCGAAATCGACAAGCAGTACCCAG 294 285 1089 Antisense
TGCCAGATGTTTCCTTATTTTTTTC 307 587 1133 Antisense
GTACTGTTTTGTTGTTTCTGTCACT 226 459 1230 Antisense
Sequence Source Affymetrix Proprietary Database