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[178244_at]

Description F01D5.6 /REP_DB=WormBase Gene ID /WP=CE18563 /TR=Q9XVA8 /GB=CAB04042.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1363
1 2 3 4 range
A 48.5
(-3)
A 		1080.1
(1.5)
P 		1411
(3)
P 		59.4
(-3)
A 		1363
B 93.7
(-2.8)
A 		1216.4
(3)
P 		1187.5
(2.9)
P 		53.5
(-3)
A 		1163
C 64.8
(-3)
A 		1260.1
(3)
P 		1051.2
(2)
P 		95.6
(-2.8)
A 		1195
avr 69
(-3) 		1185.5
(2.8) 		1216.6
(3) 		69.5
(-3) 		1148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1111
1 2 3 4 5 6 range
A 103.3
(-3)
A 		828.1
(1.1)
P 		602.3
(-0.2)
P 		1171.8
(3)
P 		994.3
(2)
P 		347.5
(-1.6)
P 		1069
B 126.7
(-3)
A 		858.6
(1)
P 		530.7
(-0.8)
P 		1020.3
(1.9)
P 		1214
(3)
P 		275.6
(-2.2)
P 		1087
C 146.7
(-3)
A 		681.5
(0.1)
P 		646.3
(-0.1)
P 		1167
(3)
P 		1064.7
(2.4)
P 		367.4
(-1.7)
P 		1020
avr 125.6
(-3) 		789.4
(1) 		593.1
(-0.2) 		1119.7
(3) 		1091
(2.8) 		330.2
(-1.8) 		994
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 17.7
(-2.9)
A 		234.5
(0.8)
P 		368.9
(3)
P 		8.7
(-3)
A 		360
B 29.9
(-2.6)
A 		300.4
(3)
P 		275.2
(2.5)
P 		11.4
(-3)
A 		289
C 21.4
(-2.9)
A 		362.3
(2.9)
P 		366.4
(3)
P 		16.1
(-3)
A 		350
avr 23
(-2.8) 		299.1
(2.3) 		336.8
(3) 		12.1
(-3) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 19
(-3)
A 		294.5
(2.9)
P 		131.2
(-0.6)
P 		297.2
(2.9)
P 		300
(3)
P 		84.6
(-1.6)
P 		281
B 44.1
(-3)
A 		285.8
(0.2)
P 		128.9
(-1.9)
P 		270.2
(0)
P 		493.2
(3)
P 		102.8
(-2.2)
P 		449
C 54.4
(-3)
A 		207.9
(0.2)
P 		164.5
(-0.7)
P 		234.7
(0.7)
P 		344.5
(3)
P 		123
(-1.6)
P 		290
avr 39.2
(-3) 		262.7
(0.9) 		141.5
(-1.2) 		267.4
(1) 		379.2
(3) 		103.5
(-1.9) 		340
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3383
Sequence Type Exemplar sequence
Representative Public ID F01D5.6 NCBI
Target Description F01D5.6 /REP_DB=WormBase Gene ID /WP=CE18563 /TR=Q9XVA8 /GB=CAB04042.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064535 NCBI Caenorhabditis elegans F01D5.6 (F01D5.6) mRNA, complete cds. 11/11 None
SNAP00000039843 ENSEMBL cdna:SNAP chromosome:CEL140:II:14006403:14009823:1 11/11 None
GENEFINDER00000039848 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14006403:14010469:1 11/11 None
F01D5.6 ENSEMBL cdna:known chromosome:CEL140:II:14006403:14008406:1 gene:F01D5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14006399-14008360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01D5.6
Entrez Gene 175050 Entrez gene
SwissProt Q9XVA8 EMBL-EBI
WormBase CE18563 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04042 Hypothetical protein F01D5.6 [Caenorhabditis elegans] ref|NP_496936.1| F01D5.6 [Caenorhabditis elegans] 0.0
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 0.0
blast CAB04038 Hypothetical protein F01D5.7a [Caenorhabditis elegans] ref|NP_001022066.1| F01D5.7a [Caenorhabditis elegans] 0.0
blast CAE73387 Hypothetical protein CBG20827 [Caenorhabditis briggsae] 1.0E-171
blast CAE73387 Hypothetical protein CBG20827 [Caenorhabditis briggsae] 1.0E-165
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR007621 EMBL-EBI Protein of unknown function DUF477 2.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496936.1 1 7-29
F01D5.6 1 7-29
SNAP00000039843 1 7-29
GENEFINDER00000039848 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:178244_AT
ggtgcagccgacattcggcaggctactaaaaacacagctgatagattatggggtgctcag
ataattgctgcagccgacagctcacgggaattagtcgaagctgcagccaacactttcctg
gtcctctttttcaaaacttacgatcaaacttccagattcatgccaaacccacctgcggtc
tctgctgttgaatcccaaccattccgggccgctggtctcccgaacagtgtgcaacaggca
aaacgcccattcccagctttcaacacgattcatgagagcattgatgaagatgataaggtc
tgggtatcaatccttcagcaggccatggcccgatgtggacagaacgatgcagatcttcca
aaacatgtcagagcagttgttgaagaagccatgagtatctccttgaagctgatttccgac
tcacgttacaacaagatcgaggaggagaccgagaagaacaaggaagtacttggaaaccga
caaaaagcctgggacggagccaccaacgacttcatccgcccactcttccagaagtaccgc
aactcgatcctttccggagcatcacaaacctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCAGCCGACATTCGGCAGGCTA 457 499 658 Antisense
AAACTTCCAGATTCATGCCAAACCC 142 129 803 Antisense
CTGCTGTTGAATCCCAACCATTCCG 347 237 839 Antisense
CTGGTCTCCCGAACAGTGTGCAACA 99 241 869 Antisense
ATTCCCAGCTTTCAACACGATTCAT 651 5 906 Antisense
GGTCTGGGTATCAATCCTTCAGCAG 614 501 954 Antisense
CAGCAGGCCATGGCCCGATGTGGAC 176 205 973 Antisense
GTATCTCCTTGAAGCTGATTTCCGA 589 453 1052 Antisense
GATTTCCGACTCACGTTACAACAAG 66 427 1068 Antisense
TTCCAGAAGTACCGCAACTCGATCC 274 697 1183 Antisense
CTTTCCGGAGCATCACAAACCTGCC 537 223 1207 Antisense
Sequence Source Affymetrix Proprietary Database