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[178243_s_at]

Description F32B6.4 /REP_DB=WormBase Gene ID /WP=CE20742 /TR=O45432 /GB=CAB03040.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 2.7
(-3)
A 		4.8
(-2.3)
A 		3.6
(-2.7)
A 		19.8
(3)
A 		17
B 9
(-1.3)
A 		13.7
(0.6)
A 		4.6
(-3)
A 		19.8
(3)
A 		15
C 5.8
(-2.9)
A 		8.9
(-2.5)
A 		4.3
(-3)
A 		64.5
(3)
A 		60
avr 5.8
(-2.7) 		9.1
(-2) 		4.2
(-3) 		34.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 2.3
(-3)
A 		3.8
(-3)
A 		2.1
(-3)
A 		58.4
(-2.3)
A 		212.7
(-0.4)
P 		480.3
(3)
P 		478
B 8.3
(-2.9)
A 		2.3
(-3)
A 		2.5
(-3)
A 		27.9
(-2.7)
A 		229.9
(0.1)
P 		443.3
(3)
P 		441
C 8
(-3)
A 		5.2
(-3)
A 		13.7
(-2.9)
A 		45.3
(-2.4)
A 		217.2
(-0)
P 		434.9
(3)
P 		430
avr 6.2
(-3) 		3.8
(-3) 		6.1
(-3) 		43.9
(-2.5) 		219.9
(-0.1) 		452.8
(3) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1
(-2.7)
A 		1
(-2.7)
A 		0.9
(-3)
A 		2.9
(3)
A 		2
B 2.9
(0.5)
A 		3.4
(1.5)
A 		1.1
(-3)
A 		4.2
(3)
A 		3
C 1.9
(-2.7)
A 		2.6
(-2.3)
A 		1.5
(-3)
A 		10.9
(3)
A 		9
avr 1.9
(-2.1) 		2.3
(-1.6) 		1.2
(-3) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.4
(-2.9)
A 		0.4
(-3)
A 		14.8
(-2.3)
A 		64.2
(0.3)
P 		116.9
(3)
P 		117
B 2.9
(-2.9)
A 		0.8
(-3)
A 		0.6
(-3)
A 		7.4
(-2.8)
A 		93.4
(0.4)
P 		165.3
(3)
P 		165
C 3
(-2.9)
A 		1.6
(-3)
A 		3.5
(-2.9)
A 		9.1
(-2.7)
A 		70.3
(-0.1)
P 		145.6
(3)
P 		144
avr 2.1
(-3) 		1.3
(-3) 		1.5
(-3) 		10.4
(-2.6) 		76
(0.2) 		142.6
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178243_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9615
Sequence Type Exemplar sequence
Representative Public ID F32B6.4 NCBI
Target Description F32B6.4 /REP_DB=WormBase Gene ID /WP=CE20742 /TR=O45432 /GB=CAB03040.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069378 NCBI Caenorhabditis elegans F32B6.4 (F32B6.4) mRNA, complete cds. 11/11 None
SNAP00000041531 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9890644:9891978:-1 11/11 None
GENEFINDER00000041544 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9887162:9891978:-1 11/11 None
F32B6.4 ENSEMBL cdna:known chromosome:CEL140:IV:9890623:9891979:-1 gene:F32B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9890649-9891966(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32B6.4
Entrez Gene 177842 Entrez gene
SwissProt O45432 EMBL-EBI
WormBase CE20742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03045 Hypothetical protein F32B6.10 [Caenorhabditis elegans] ref|NP_501778.1| F32B6.10 [Caenorhabditis elegans] 0.0
blast CAB03040 Hypothetical protein F32B6.4 [Caenorhabditis elegans] ref|NP_501779.1| F32B6.4 [Caenorhabditis elegans] 1.0E-120
blast CAB03040 Hypothetical protein F32B6.4 [Caenorhabditis elegans] ref|NP_501779.1| F32B6.4 [Caenorhabditis elegans] 1.0E-95
blast AAK31408 Hypothetical protein C16A11.7 [Caenorhabditis elegans] ref|NP_494749.2| C16A11.7 [Caenorhabditis elegans] 4.0E-84
blast AAK31408 Hypothetical protein C16A11.7 [Caenorhabditis elegans] ref|NP_494749.2| C16A11.7 [Caenorhabditis elegans] 2.0E-80
blast CAE59971 Hypothetical protein CBG03462 [Caenorhabditis briggsae] 3.0E-71
blast CAE74257 Hypothetical protein CBG21946 [Caenorhabditis briggsae] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.0031
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-11
Sequence
Target Sequence 
>C. ELEGANS:178243_S_AT
caacatcagcgtccctaacgcattcagcccacgctcctattcgtcacgtggcactgaaat
ttggagtgtagcaacatctggatcttcaaattcaacaactgaacttcaaggcgctcaatc
gccaagtatgggatcacgtgtcagtgatagtcatttgctcactcttggctcggattctcg
ttcggtgtcaaataatttgaatatagctgcgacgatggctgagccaaatcttgaggagca
tttgaagggtgttctccacaagaaggaggctgcgaagttgacaagcccgagtgatttcac
gttgtattatcgtgtcacgaagggtcagagcaagtcggaggtggcaactacgattccatt
attcatttgttacagaaatgcagataatcaggtatccaacttccgtgttgtgcaagtgct
cactgagaacaatagcatgtggtggactgtgatcatcaataagcagcacactcagatgtt
ccgtcgcctatccgacctcgttcgctgctatcactcgtaccgttacatcaatccagaaac
tggaggctcagagattttcccgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACATCAGCGTCCCTAACGCATTC 216 189 84 Antisense
CTCCTATTCGTCACGTGGCACTGAA 377 233 117 Antisense
ACTGAACTTCAAGGCGCTCAATCGC 164 97 181 Antisense
TGATAGTCATTTGCTCACTCTTGGC 558 563 228 Antisense
ATAGCTGCGACGATGGCTGAGCCAA 575 21 286 Antisense
GGCAACTACGATTCCATTATTCATT 397 535 426 Antisense
TAATCAGGTATCCAACTTCCGTGTT 521 633 468 Antisense
TTCCGTGTTGTGCAAGTGCTCACTG 240 697 484 Antisense
TAAGCAGCACACTCAGATGTTCCGT 631 637 543 Antisense
ATCACTCGTACCGTTACATCAATCC 173 29 593 Antisense
TGGAGGCTCAGAGATTTTCCCGATC 55 551 624 Antisense
Sequence Source Affymetrix Proprietary Database