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[178242_at]

Description T27E7.3 /REP_DB=WormBase Gene ID /WP=CE16507 /TR=O45858 /GB=CAB05290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 27.1
(-1.5)
A 		2
(-3)
A 		26
(-1.6)
P 		103.8
(3)
A 		102
B 15.4
(-2.2)
A 		29.7
(-0.6)
A 		8.7
(-3)
A 		60.6
(3)
P 		52
C 21.4
(-1.6)
A 		33.4
(-0.5)
A 		5.7
(-3)
A 		73.3
(3)
P 		68
avr 21.3
(-2.3) 		21.7
(-2.3) 		13.5
(-3) 		79.2
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 26.3
(-0.9)
A 		32.1
(2.1)
A 		33.2
(2.6)
A 		33.9
(3)
A 		25.1
(-1.5)
A 		22.2
(-3)
A 		12
B 20.6
(-1.6)
A 		71.3
(3)
A 		34.9
(-0.3)
A 		5.8
(-3)
A 		10.8
(-2.5)
A 		32.9
(-0.5)
A 		66
C 21.8
(-1.4)
A 		13.8
(-2.2)
A 		63.9
(3)
M 		5.9
(-3)
A 		25.3
(-1)
P 		27.4
(-0.8)
A 		58
avr 22.9
(-1.4) 		39.1
(2) 		44
(3) 		15.2
(-3) 		20.4
(-1.9) 		27.5
(-0.4) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.9
(0.9)
A 		0.4
(-3)
A 		6.8
(-0.4)
P 		15.2
(3)
A 		15
B 4.9
(-1.4)
A 		7.3
(-0.1)
A 		2
(-3)
A 		12.9
(3)
P 		11
C 7.1
(-0.1)
A 		9.6
(1.4)
A 		2
(-3)
A 		12.4
(3)
P 		10
avr 7.3
(-0.8) 		5.8
(-1.7) 		3.6
(-3) 		13.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.9
(-3)
A 		11.4
(3)
A 		7.2
(-0.9)
A 		8.6
(0.4)
A 		7.6
(-0.5)
A 		5.4
(-2.5)
A 		7
B 7.2
(-1.5)
A 		23.7
(3)
A 		8.5
(-1.1)
A 		1.5
(-3)
A 		4.4
(-2.2)
A 		12.3
(-0.1)
A 		22
C 8.1
(-0.3)
A 		4.2
(-1.8)
A 		16.3
(3)
M 		1.2
(-3)
A 		8.2
(-0.2)
P 		9.2
(0.2)
A 		15
avr 6.7
(-1.1) 		13.1
(3) 		10.7
(1.5) 		3.8
(-3) 		6.7
(-1.1) 		9
(0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8480
Sequence Type Exemplar sequence
Representative Public ID T27E7.3 NCBI
Target Description T27E7.3 /REP_DB=WormBase Gene ID /WP=CE16507 /TR=O45858 /GB=CAB05290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070360 NCBI Caenorhabditis elegans T27E7.3 (T27E7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000042435 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14529129:14530776:1 11/11 None
T27E7.3 ENSEMBL cdna:known chromosome:CEL140:IV:14527771:14530776:1 gene:T27E7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042428 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14527776-14530782(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E7.3
Entrez Gene 188997 Entrez gene
SwissProt O45858 EMBL-EBI
WormBase CE16507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05290 Hypothetical protein T27E7.3 [Caenorhabditis elegans] ref|NP_502761.1| T27E7.3 [Caenorhabditis elegans] 0.0
blast CAB05290 Hypothetical protein T27E7.3 [Caenorhabditis elegans] ref|NP_502761.1| T27E7.3 [Caenorhabditis elegans] 1.0E-153
blast CAE17979 Hypothetical protein T27E7.9 [Caenorhabditis elegans] ref|NP_001023405.1| T27E7.9 [Caenorhabditis elegans] 2.0E-72
blast CAB05288 Hypothetical protein T27E7.5 [Caenorhabditis elegans] ref|NP_502763.1| T27E7.5 [Caenorhabditis elegans] 5.0E-70
blast CAB05288 Hypothetical protein T27E7.5 [Caenorhabditis elegans] ref|NP_502763.1| T27E7.5 [Caenorhabditis elegans] 5.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502761.1 5 130-149,159-181,237-256,276-298,319-341
T27E7.3 5 130-149,159-181,237-256,276-298,319-341
GENEFINDER00000042435 5 43-62,72-94,150-169,189-211,232-254
Sequence
Target Sequence 
>C. ELEGANS:178242_AT
aagcaccattaaaacactctacatttgttgtattatcagagattatgtgttaagcccagt
agttgcttgtgtttcagttatatattttattggttcaatttcgattgaaacattttctct
tgaaacactattttcactcaagtctcagtttactatttttcgaattttccagctgattgc
gatggactccactatactttttgtaccagctgctgtattgtactatctcagtcagagacg
gaacctgaataataaggaacatgtcaaaaatccattacaagttcatatattccatcaggc
aatgattatgacaggaattaaagtgatattaatcgcactttgcataataatgtctctcat
tgaccagaatctttcttggataactaccgctacacaattggacccaattttggtagttgt
ttcaattcaaatctctacgacaagatgtttcaaaaaaagattgatagcctaccgagaggg
caggaacctggaagttgtgatacctacactggctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCACCATTAAAACACTCTACATT 489 151 675 Antisense
GCCCAGTAGTTGCTTGTGTTTCAGT 177 287 728 Antisense
TTTTCACTCAAGTCTCAGTTTACTA 554 675 805 Antisense
TTTCGAATTTTCCAGCTGATTGCGA 267 671 832 Antisense
AGCTGATTGCGATGGACTCCACTAT 525 81 845 Antisense
GGACTCCACTATACTTTTTGTACCA 35 525 858 Antisense
GCTGCTGTATTGTACTATCTCAGTC 592 297 883 Antisense
AACTACCGCTACACAATTGGACCCA 441 137 1056 Antisense
GTTGTTTCAATTCAAATCTCTACGA 328 435 1090 Antisense
AGCCTACCGAGAGGGCAGGAACCTG 672 81 1140 Antisense
AAGTTGTGATACCTACACTGGCTCC 109 157 1166 Antisense
Sequence Source Affymetrix Proprietary Database