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[178240_at]

Description ZK822.2 /REP_DB=WormBase Gene ID /WP=CE06645 /TR=Q23614 /GB=CAA98067.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 34      6grp_total > 50      4grp_total > 02      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5738
1 2 3 4 range
A 1441.3
(-3)
P 		1601.7
(-2.8)
P 		1459.7
(-3)
P 		5798
(3)
P 		4357
B 1537.4
(-2.8)
P 		1410.8
(-3)
P 		1591.8
(-2.7)
P 		5713.5
(3)
P 		4303
C 1500
(-2.9)
P 		1509.6
(-2.9)
P 		1368.7
(-3)
P 		7107
(3)
P 		5738
avr 1492.9
(-3) 		1507.4
(-3) 		1473.4
(-3) 		6206.2
(3) 		4733

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2532
1 2 3 4 5 6 range
A 1926
(-2.2)
P 		2378.2
(-1)
P 		3906.8
(3)
P 		3439.8
(1.8)
P 		1917.7
(-2.3)
P 		1641.4
(-3)
P 		2265
B 2331.6
(-0.7)
P 		2988.1
(2.8)
P 		3016.1
(3)
P 		3011.1
(3)
P 		2274.5
(-1)
P 		1901.7
(-3)
P 		1114
C 2282.5
(-1.3)
P 		3082.1
(0.5)
P 		2599.9
(-0.6)
P 		4117.3
(3)
P 		1585.4
(-3)
P 		1923.4
(-2.2)
P 		2532
avr 2180
(-1.7) 		2816.1
(0.5) 		3174.3
(1.8) 		3522.7
(3) 		1925.9
(-2.6) 		1822.2
(-3) 		1701
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 870
1 2 3 4 range
A 524.8
(-0.9)
P 		347.7
(-3)
P 		381.6
(-2.6)
P 		848.7
(3)
P 		501
B 490.3
(-2)
P 		348.4
(-3)
P 		368.9
(-2.9)
P 		1217.5
(3)
P 		869
C 496.5
(-2.5)
P 		434
(-3)
P 		477
(-2.7)
P 		1198.3
(3)
P 		764
avr 503.9
(-1.9) 		376.7
(-3) 		409.2
(-2.7) 		1088.2
(3) 		712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 640
1 2 3 4 5 6 range
A 355
(-3)
P 		845.8
(2.7)
P 		850.8
(2.7)
P 		872.4
(3)
P 		578.7
(-0.4)
P 		399.6
(-2.5)
P 		517
B 811.3
(-0.9)
P 		994.6
(3)
P 		732.4
(-2.5)
P 		797.5
(-1.1)
P 		924.1
(1.5)
P 		709.1
(-3)
P 		286
C 846
(1.7)
P 		940.4
(3)
P 		661.7
(-0.9)
P 		828
(1.4)
P 		513
(-3)
P 		643.9
(-1.2)
P 		427
avr 670.8
(-1.5) 		926.9
(3) 		748.3
(-0.1) 		832.6
(1.3) 		671.9
(-1.5) 		584.2
(-3) 		343
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9317
Sequence Type Exemplar sequence
Representative Public ID ZK822.2 NCBI
Target Description ZK822.2 /REP_DB=WormBase Gene ID /WP=CE06645 /TR=Q23614 /GB=CAA98067.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028459
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK822.6 ENSEMBL cdna:known chromosome:CEL140:IV:11924655:11925225:-1 gene:ZK822.6 None
GENEFINDER00000037322 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11924655:11925330:-1 None
SNAP00000037316 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11924655:11925225:-1 None
NM_001028459 NCBI Caenorhabditis elegans ZK822.6 (ZK822.6) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069856 8/11 Cross Hyb Matching Probes None
SNAP00000037315 8/11 Cross Hyb Matching Probes None
GENEFINDER00000037324 8/11 Cross Hyb Matching Probes None
ZK822.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11922389-11925231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK822.6
Entrez Gene 3565316 Entrez gene
SwissProt Q5FC55 EMBL-EBI
WormBase CE37868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46588 Hypothetical protein ZK822.6 [Caenorhabditis elegans] ref|NP_001023630.1| ZK822.6 [Caenorhabditis elegans] 6.0E-63
blast CAI46588 Hypothetical protein ZK822.6 [Caenorhabditis elegans] ref|NP_001023630.1| ZK822.6 [Caenorhabditis elegans] 9.0E-63
blast CAE62146 Hypothetical protein CBG06192 [Caenorhabditis briggsae] 1.0E-36
blast CAE62146 Hypothetical protein CBG06192 [Caenorhabditis briggsae] 2.0E-28
blast CAE74709 Hypothetical protein CBG22524 [Caenorhabditis briggsae] 3.0E-14
blast NP_503226 R11G11.6 [Caenorhabditis elegans] gb|AAC69081.1| Hypothetical protein R11G11.6 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 2.1E-20
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.8E-25
Sequence
Target Sequence 
>C. ELEGANS:178240_AT
ttcattcatatcttcgagctcgtttctcgttcaaacttttctcaaattgaaattctgttt
ttttttcagaatgtacactcgtctctctattcttgttgtcgtttttcttgcaattggaac
tgtcgactcaaagcacaaacatcatcagaaaggaaatgagccagatttcgtgaaaaatct
cacaaattctcagagaagctcgttctttggaatcgtcaagaatccaggaatttcatttca
acagaaggacgataaacttgtgaaatgggcagaggataataacctttcggagcaatacgc
cgagttctcaaagaacatgaccattcacaaggaagaagtgagcaagaatatcagtggagt
catcgatcgtcttgcggctgccaaagttgaagttgacaaggtcaatgctgatttgagttt
gacgaagattcagagagacgagaaaatcgatgagctcaagaagacctacccacaagaaat
cccgactctcttctatatcggtggtcttttcgagcatccacgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTCATATCTTCGAGCTCGTTT 552 687 339 Antisense
GCTCGTTTCTCGTTCAAACTTTTCT 609 295 356 Antisense
TCAGAATGTACACTCGTCTCTCTAT 57 625 404 Antisense
CTCTCTATTCTTGTTGTCGTTTTTC 116 231 421 Antisense
AAGCTCGTTCTTTGGAATCGTCAAG 615 149 534 Antisense
GGAGCAATACGCCGAGTTCTCAAAG 262 519 627 Antisense
CAGTGGAGTCATCGATCGTCTTGCG 100 209 690 Antisense
GATGAGCTCAAGAAGACCTACCCAC 344 411 787 Antisense
CCACAAGAAATCCCGACTCTCTTCT 419 275 808 Antisense
CTCTCTTCTATATCGGTGGTCTTTT 113 229 824 Antisense
GTGGTCTTTTCGAGCATCCACGTAG 52 489 839 Antisense
Sequence Source Affymetrix Proprietary Database