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[178239_at]

Description K03D7.8 /REP_DB=WormBase Gene ID /WP=CE16222 /TR=O45653 /GB=CAB04555.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 11
(-2.3)
A 		6.3
(-3)
A 		47.4
(3)
A 		42.2
(2.2)
A 		41
B 32.1
(3)
A 		29.4
(2.4)
A 		4.7
(-3)
A 		12
(-1.4)
A 		27
C 3.3
(-3)
A 		16.9
(-0.2)
A 		4.4
(-2.8)
A 		32.8
(3)
A 		30
avr 15.5
(-3) 		17.5
(-2.1) 		18.8
(-1.5) 		29
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 47.2
(1.9)
A 		4.2
(-3)
A 		5.1
(-2.9)
A 		7.2
(-2.7)
A 		56.6
(3)
A 		29.7
(-0.1)
A 		52
B 24.6
(1.9)
A 		5.6
(-3)
A 		14.5
(-0.7)
A 		7.3
(-2.6)
A 		16.2
(-0.3)
A 		29
(3)
A 		23
C 17.5
(3)
A 		11.2
(0.2)
A 		9.5
(-0.5)
A 		12.8
(0.9)
A 		4.1
(-2.9)
A 		3.9
(-3)
A 		14
avr 29.8
(3) 		7
(-3) 		9.7
(-2.3) 		9.1
(-2.4) 		25.6
(1.9) 		20.9
(0.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4
(-1.6)
A 		1.4
(-3)
A 		12.4
(3)
A 		6.2
(-0.4)
A 		11
B 10.2
(3)
A 		7.3
(1.1)
A 		1.1
(-3)
A 		2.6
(-2)
A 		9
C 1.1
(-3)
A 		4.9
(2.2)
A 		1.5
(-2.5)
A 		5.5
(3)
A 		4
avr 5.1
(3) 		4.5
(-3) 		5
(2) 		4.8
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.7
(-0.2)
A 		1.5
(-2.9)
A 		1.1
(-3)
A 		1.8
(-2.7)
A 		17.1
(3)
A 		7.2
(-0.7)
A 		16
B 8.6
(1.5)
A 		1.9
(-3)
A 		3.5
(-1.9)
A 		1.9
(-3)
A 		6.6
(0.2)
A 		10.8
(3)
A 		9
C 6.5
(3)
A 		3.4
(-0.6)
A 		2.4
(-1.7)
A 		2.6
(-1.5)
A 		1.3
(-3)
A 		1.3
(-3)
A 		5
avr 7.9
(2.6) 		2.3
(-2.8) 		2.3
(-2.8) 		2.1
(-3) 		8.3
(3) 		6.4
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13123
Sequence Type Exemplar sequence
Representative Public ID K03D7.8 NCBI
Target Description K03D7.8 /REP_DB=WormBase Gene ID /WP=CE16222 /TR=O45653 /GB=CAB04555.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075030 NCBI Caenorhabditis elegans K03D7.8 (K03D7.8) mRNA, complete cds. 11/11 None
SNAP00000027354 ENSEMBL cdna:SNAP chromosome:CEL140:V:17492078:17493086:-1 9/11 None
GENEFINDER00000027366 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17492078:17493086:-1 9/11 None
K03D7.8 ENSEMBL cdna:known chromosome:CEL140:V:17492078:17494185:-1 gene:K03D7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17492077-17494185(-) 97.8 100.0
Public Domain and Genome References
Gene Title
Ensembl K03D7.8
Entrez Gene 186947 Entrez gene
SwissProt O45653 EMBL-EBI
WormBase CE16222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04555 Hypothetical protein K03D7.8 [Caenorhabditis elegans] ref|NP_507431.1| K03D7.8 [Caenorhabditis elegans] 0.0
blast CAB04555 Hypothetical protein K03D7.8 [Caenorhabditis elegans] ref|NP_507431.1| K03D7.8 [Caenorhabditis elegans] 6.0E-80
blast AAW27851 SJCHGC02198 protein [Schistosoma japonicum] 3.0E-14
blast AAW27851 SJCHGC02198 protein [Schistosoma japonicum] 4.0E-13
blast tpe|CAJ00230.1 TPA: gag-pol polyprotein [Schistosoma mansoni] 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:178239_AT
gaattcggacgtccggtgtccggatgcgtgtgcgtccggcgttcagtttttccggacgcg
tgtgcgtccggcgtccgaaaaaaccggacgagtgtgcgtccggcgtccggtttttcggac
gtccgaaaatttgtttttttttgttttttgtttacaatctcactcaatctcactgagatg
tatacaaaaaacaaaaaaaccggacgcacccgcgtccgaaaaaaccggacgtccggttgc
acagccctagcgcagactaccacaccagaaccacaaagaaaccacgccagcactggagtg
atcagtaccgcaacgtttcatgtccgcttggtgagatggtccacaatcctactggcgtac
aatttcaagatcgaatacgtcaggactgatgactttggacaagcagacgcgaagtcaagg
atgatccagaagtcgccgactgaggaggaggatattgtcatcgctcaggtggaattggac
gttgaggagacgctgcattcagcaattaggaaacttccaattcgtgtgacggatattcag
gaggagactcgcaaggatagcgttctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGGACGTCCGGTGTCCGGAT 667 173 613 Antisense
TGTTTACAATCTCACTCAATCTCAC 476 561 761 Antisense
GAAACCACGCCAGCACTGGAGTGAT 156 359 890 Antisense
TCAGTACCGCAACGTTTCATGTCCG 681 621 914 Antisense
ATGTCCGCTTGGTGAGATGGTCCAC 485 47 932 Antisense
GTCCACAATCCTACTGGCGTACAAT 687 477 951 Antisense
AAGGATGATCCAGAAGTCGCCGACT 258 159 1029 Antisense
GATATTGTCATCGCTCAGGTGGAAT 88 427 1063 Antisense
GGACGTTGAGGAGACGCTGCATTCA 257 523 1089 Antisense
GAAACTTCCAATTCGTGTGACGGAT 580 355 1122 Antisense
GACTCGCAAGGATAGCGTTCTCCAA 211 375 1158 Antisense
Sequence Source Affymetrix Proprietary Database