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[178238_at]

Description F47H4.9 /REP_DB=WormBase Gene ID /WP=CE20826 /TR=Q9XU28 /GB=CAB07208.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      6grp_total > 49      4grp_total > 05      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 48.6
(-2.4)
A 		63.4
(-1.5)
P 		39.5
(-3)
A 		137.1
(3)
P 		98
B 68.2
(-0.1)
P 		3.2
(-3)
A 		29
(-1.8)
A 		135.9
(3)
P 		133
C 89.4
(0.6)
P 		35.4
(-3)
A 		43.7
(-2.4)
A 		124.6
(3)
P 		89
avr 68.7
(-0.9) 		34
(-3) 		37.4
(-2.8) 		132.5
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 104.1
(3)
P 		42.6
(-3)
A 		58.2
(-1.5)
P 		66.4
(-0.7)
P 		75.4
(0.2)
P 		64.6
(-0.9)
P 		62
B 46.9
(-1.2)
P 		45.5
(-1.5)
P 		46
(-1.4)
A 		38.7
(-3)
A 		63.6
(2.6)
P 		65.4
(3)
P 		27
C 64.7
(-1.5)
P 		67.3
(-0.8)
P 		59.1
(-3)
P 		69
(-0.3)
P 		71.5
(0.4)
P 		81.1
(3)
P 		22
avr 71.9
(3) 		51.8
(-3) 		54.4
(-2.2) 		58
(-1.1) 		70.2
(2.5) 		70.4
(2.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 17.7
(1.5)
A 		13.8
(-0.9)
P 		10.3
(-3)
A 		20.1
(3)
P 		10
B 21.7
(1.4)
P 		0.8
(-3)
A 		6.7
(-1.7)
A 		29
(3)
P 		28
C 29.6
(3)
P 		10.2
(-3)
A 		15.2
(-1.5)
A 		21
(0.3)
P 		19
avr 23
(2.8) 		8.3
(-3) 		10.7
(-2) 		23.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 19.2
(0.9)
P 		15.2
(-1.5)
A 		12.7
(-3)
P 		16.8
(-0.6)
P 		22.8
(3)
P 		15.7
(-1.2)
P 		10
B 16.3
(-0.7)
P 		15.1
(-1.1)
P 		11.2
(-2.6)
A 		10.2
(-3)
A 		25.8
(3)
P 		24.4
(2.5)
P 		16
C 24
(1.6)
P 		20.5
(-0)
P 		15
(-2.5)
P 		13.9
(-3)
P 		23.1
(1.2)
P 		27.2
(3)
P 		13
avr 19.8
(0.7) 		16.9
(-0.9) 		13
(-3) 		13.6
(-2.7) 		23.9
(3) 		22.4
(2.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14779
Sequence Type Exemplar sequence
Representative Public ID F47H4.9 NCBI
Target Description F47H4.9 /REP_DB=WormBase Gene ID /WP=CE20826 /TR=Q9XU28 /GB=CAB07208.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074991 NCBI Caenorhabditis elegans F47H4.9 (F47H4.9) mRNA, complete cds. 11/11 None
SNAP00000022027 ENSEMBL cdna:SNAP chromosome:CEL140:V:17347805:17350286:1 11/11 None
GENEFINDER00000022041 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17347805:17350286:1 11/11 None
F47H4.9 ENSEMBL cdna:known chromosome:CEL140:V:17347805:17350286:1 gene:F47H4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17347804-17350286(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47H4.9
Entrez Gene 185955 Entrez gene
SwissProt Q9XU28 EMBL-EBI
WormBase CE20826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 0.0
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 0.0
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-56
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-56
Sequence
Target Sequence 
>C. ELEGANS:178238_AT
gaatgattggtccgtggtcatgaaaaataaaaagcttaagctgaaagtgttccaattatt
catatcagtcgaaaagagcgaccatcagaaaatctataaaactatgaacacggttttgag
aaattcaaactgttcatacatagagaagatcacactagagggattttcattcagtgaagt
tgctaagatacttcggaattttaaatcaggaatactgcaagagattgtgctgggctcgcc
aactgataacgccgatattgagaagttggttgatatgagacaatggaaagaggcaaaaaa
ttttgaaagcagtcggaactgtattatgacgattccaattgagaatttgtttcacttctc
gagatttgatgtttccctgaaatctctatcaaagtcagatgcaatattgatccgagagaa
actgctgaagtccagtgattttgaacatggatgcttccgaatgttcaattatgatcctat
agacattttgaacgtgtttgagcagaattattcaggaggatcgtctggttcgattacata
caggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGATTGGTCCGTGGTCATGAAA 411 331 1113 Antisense
GTGTTCCAATTATTCATATCAGTCG 446 485 1159 Antisense
TCACACTAGAGGGATTTTCATTCAG 213 629 1262 Antisense
GCTCGCCAACTGATAACGCCGATAT 397 297 1346 Antisense
AACTGTATTATGACGATTCCAATTG 405 143 1429 Antisense
GAATTTGTTTCACTTCTCGAGATTT 45 327 1455 Antisense
GTCAGATGCAATATTGATCCGAGAG 319 467 1506 Antisense
GGATGCTTCCGAATGTTCAATTATG 113 513 1561 Antisense
TGATCCTATAGACATTTTGAACGTG 63 565 1584 Antisense
TATTCAGGAGGATCGTCTGGTTCGA 44 665 1621 Antisense
GTCTGGTTCGATTACATACAGGAAT 115 473 1635 Antisense
Sequence Source Affymetrix Proprietary Database