[Home] | [Total List]

[178237_at]

Description F19B2.8 /REP_DB=WormBase Gene ID /WP=CE23673 /TR=Q9U3I8 /GB=CAB60285.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 12      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 27.8
(-1.9)
A 		9.3
(-2.9)
A 		8.4
(-3)
A 		113
(3)
A 		105
B 30.6
(1.1)
A 		40.9
(3)
A 		8.1
(-3)
A 		19.3
(-1)
A 		33
C 42
(-1.6)
A 		38.4
(-1.8)
A 		18.8
(-3)
A 		115.9
(3)
P 		97
avr 33.5
(-1.2) 		29.5
(-1.5) 		11.8
(-3) 		82.7
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 9.1
(-1.4)
A 		15.8
(0.2)
A 		26.5
(2.7)
A 		27.6
(3)
A 		12.7
(-0.5)
A 		2.3
(-3)
A 		25
B 8.9
(-2.2)
A 		39.8
(3)
A 		37.2
(2.6)
A 		17.1
(-0.8)
A 		4.2
(-3)
A 		19.9
(-0.4)
A 		36
C 24.1
(-0.9)
A 		51.8
(3)
P 		8.8
(-3)
A 		51.8
(3)
A 		34.4
(0.6)
A 		26.5
(-0.5)
A 		43
avr 14
(-3) 		35.8
(3) 		24.2
(-0.2) 		32.2
(2) 		17.1
(-2.1) 		16.2
(-2.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.1
(0.4)
A 		2
(-3)
A 		2.2
(-2.9)
A 		16.5
(3)
A 		15
B 9.7
(2.7)
A 		10.1
(3)
A 		1.9
(-3)
A 		4.1
(-1.4)
A 		8
C 13.9
(0.4)
A 		11.1
(-0.9)
A 		6.6
(-3)
A 		19.5
(3)
P 		13
avr 11.2
(1.7) 		7.7
(-0.5) 		3.6
(-3) 		13.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.7
(-2)
A 		5.6
(1.7)
A 		5.8
(1.9)
A 		7
(3)
A 		3.8
(-0)
A 		0.6
(-3)
A 		6
B 3.1
(-2.3)
A 		13.2
(3)
A 		9
(0.8)
A 		4.5
(-1.5)
A 		1.7
(-3)
A 		7.4
(-0)
A 		12
C 8.9
(-0)
A 		15.8
(3)
P 		2.2
(-3)
A 		10.4
(0.6)
A 		11.1
(0.9)
A 		8.9
(-0)
A 		14
avr 4.6
(-3) 		11.5
(3) 		5.7
(-2) 		7.3
(-0.7) 		5.5
(-2.2) 		5.6
(-2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13134
Sequence Type Exemplar sequence
Representative Public ID F19B2.8 NCBI
Target Description F19B2.8 /REP_DB=WormBase Gene ID /WP=CE23673 /TR=Q9U3I8 /GB=CAB60285.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075490
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000019292 ENSEMBL cdna:SNAP chromosome:CEL140:V:20181840:20184676:-1 None
F19B2.8 ENSEMBL cdna:known chromosome:CEL140:V:20181840:20184676:-1 gene:F19B2.8 None
NM_075490 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-16) (srz-16) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F19B2.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20179919-20184676(-) 98.74 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-16
Ensembl F19B2.8
Entrez Gene 184666 Entrez gene
SwissProt Q9U3I8 EMBL-EBI
WormBase CE37506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60285 Hypothetical protein F19B2.8 [Caenorhabditis elegans] ref|NP_507891.2| Serpentine Receptor, class Z family member (srz-16) [Caenorhabditis elegans] 1.0E-176
blast CAE71687 Hypothetical protein CBG18661 [Caenorhabditis briggsae] 1.0E-33
blast CAB05140 Hypothetical protein C32H11.2 [Caenorhabditis elegans] ref|NP_502464.1| Serpentine Receptor, class Z family member (srz-15) [Caenorhabditis elegans] 2.0E-33
blast CAB60285 Hypothetical protein F19B2.8 [Caenorhabditis elegans] ref|NP_507891.2| Serpentine Receptor, class Z family member (srz-16) [Caenorhabditis elegans] 6.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.8E-13
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.7E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507891.2 7 15-46,67-89,104-126,128-150,196-215,235-257,272-289
F19B2.8 7 15-46,67-89,104-126,128-150,196-215,235-257,272-289
SNAP00000019292 1 15-45
Sequence
Target Sequence 
>C. ELEGANS:178237_AT
gaagacaccatcacgtgttagcccacaagtatttgctatcgatatttttaatataatgct
aaccttcccatctatagacgaaggcttcaagttctggaaaatctggaccggctgggtgat
tttgttcatatttttagtattttttgctagttatctgattttgttccctttctatgtata
tgtgaataaagtcagccgcactagagatcaaaagaactttctgttccctaccgtcaatca
ctttttcaaaatgattcaagtagtgtacatcctttttgcattttctttacttatttttat
tattggattttcacttggctcgagcatggttatgatcctggtattttacatattgattat
tctcctagccattgaaaaattcactctttattttttcccgtcaaccgagagatttgtaat
atcggtgcaaaaataccagatcaaatatatttggtgtctttatctagccacattcatttt
tcaatttctaatgattgtgaattctctgagatgggggatgcatgcattagatgcagtcaa
aattgaaatggtaggatttgcttacctacctacatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACACCATCACGTGTTAGCCCA 166 339 1071 Antisense
ATAATGCTAACCTTCCCATCTATAG 291 25 1123 Antisense
GGACCGGCTGGGTGATTTTGTTCAT 143 521 1175 Antisense
TAGTTATCTGATTTTGTTCCCTTTC 358 653 1218 Antisense
GTACATCCTTTTTGCATTTTCTTTA 684 459 1335 Antisense
TATTGGATTTTCACTTGGCTCGAGC 412 665 1371 Antisense
GGCTCGAGCATGGTTATGATCCTGG 98 539 1387 Antisense
TATTGATTATTCTCCTAGCCATTGA 655 663 1421 Antisense
TATTTTTTCCCGTCAACCGAGAGAT 707 659 1459 Antisense
TGGTGTCTTTATCTAGCCACATTCA 482 553 1522 Antisense
AGGATTTGCTTACCTACCTACATAC 336 47 1623 Antisense
Sequence Source Affymetrix Proprietary Database