[Home] | [Total List]

[178236_s_at]

Description F58B3.1 /REP_DB=WormBase Gene ID /WP=CE06003 /TR=Q20964 /GB=CAA97797.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 28      6grp_total > 61      4grp_total > 62      6grp_highest_sub > 03_04      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10338
1 2 3 4 range
A 9167.3
(3)
P 		5487.4
(0.5)
P 		5555
(0.6)
P 		190
(-3)
P 		8977
B 10510.7
(3)
P 		5193.7
(-0.1)
P 		6020.7
(0.4)
P 		173.1
(-3)
P 		10338
C 10174.6
(3)
P 		5015
(-0.1)
P 		5593.1
(0.2)
P 		200.5
(-3)
P 		9974
avr 9950.9
(3) 		5232
(0.1) 		5722.9
(0.4) 		187.9
(-3) 		9763

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6697
1 2 3 4 5 6 range
A 9135.9
(-2.8)
P 		10103.3
(-1.7)
P 		14146.5
(3)
P 		13921.1
(2.7)
P 		10683.9
(-1)
P 		8979.3
(-3)
P 		5167
B 8771.1
(-2.4)
P 		9728.8
(-1.3)
P 		13442.6
(3)
P 		12514.6
(1.9)
P 		11668.9
(0.9)
P 		8255.1
(-3)
P 		5188
C 9666.5
(-3)
P 		10026.5
(-2.6)
P 		14952.3
(3)
P 		14846.9
(2.9)
P 		9963.7
(-2.7)
P 		9661.8
(-3)
P 		5291
avr 9191.2
(-2.7) 		9952.9
(-1.9) 		14180.5
(3) 		13760.9
(2.5) 		10772.2
(-0.9) 		8965.4
(-3) 		5215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3340
1 2 3 4 range
A 3337.8
(3)
P 		1191.2
(-0.9)
P 		1452.2
(-0.4)
P 		27.8
(-3)
P 		3310
B 3351.8
(3)
P 		1282.7
(-0.7)
P 		1395.1
(-0.5)
P 		36.9
(-3)
P 		3315
C 3368.1
(3)
P 		1441.8
(-0.5)
P 		1949.4
(0.4)
P 		33.8
(-3)
P 		3334
avr 3352.6
(3) 		1305.2
(-0.7) 		1598.9
(-0.2) 		32.8
(-3) 		3320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3057
1 2 3 4 5 6 range
A 1684.1
(-3)
P 		3593.2
(3)
P 		3080.8
(1.4)
P 		3530.7
(2.8)
P 		3223.9
(1.8)
P 		2186.2
(-1.4)
P 		1909
B 3051.9
(-3)
P 		3238.3
(-2.3)
P 		3264.3
(-2.2)
P 		3314.7
(-2.1)
P 		4740.9
(3)
P 		3078.3
(-2.9)
P 		1689
C 3583
(1.4)
P 		3059.4
(-2.5)
P 		3805.6
(3)
P 		2985.7
(-3)
P 		3224.1
(-1.3)
P 		3234.4
(-1.2)
P 		820
avr 2773
(-3) 		3297
(0.3) 		3383.6
(0.8) 		3277
(0.2) 		3729.6
(3) 		2833
(-2.6) 		957
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178236_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9194
Sequence Type Exemplar sequence
Representative Public ID F58B3.1 NCBI
Target Description F58B3.1 /REP_DB=WormBase Gene ID /WP=CE06003 /TR=Q20964 /GB=CAA97797.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069791 NCBI Caenorhabditis elegans LYSozyme family member (lys-4) (lys-4) mRNA, complete cds. 11/11 None
SNAP00000008569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11621466:11623068:-1 11/11 None
GENEFINDER00000008582 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11621466:11623068:-1 11/11 None
F58B3.1 ENSEMBL cdna:known chromosome:CEL140:IV:11621432:11623083:-1 gene:F58B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11621471-11623074(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-4
Ensembl F58B3.1
Entrez Gene 178086 Entrez gene
SwissProt Q20964 EMBL-EBI
WormBase CE06003 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9253 peptidoglycan catabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3796 lysozyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97797 Hypothetical protein F58B3.1 [Caenorhabditis elegans] ref|NP_502192.1| LYSozyme family member (lys-4) [Caenorhabditis elegans] 1.0E-118
blast CAE62088 Hypothetical protein CBG06112 [Caenorhabditis briggsae] 1.0E-102
blast CAA97801 Hypothetical protein F58B3.3 [Caenorhabditis elegans] ref|NP_502194.1| LYSozyme family member (lys-6) [Caenorhabditis elegans] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:178236_S_AT
tgcttttgatcggtgctgcaagtgcagctagaaatggaattgatttcattcaaccagtgt
ctactgctacatttcaatgtattcataaggctggatattctttcgtaattccaagagtct
ttacttctgttggaactcttgatcatactggaattcaaaacgtcaagaatgctagagcag
ctggcctcaccgatgtcgatggatacatcttcccatgcttgagatctaactgcccatctg
ctgccaatcaagttaaggaaactcttgatgctttgaagagtgcaggaactcatgtctcta
ctctctggcttgacattgaacgtctcgcttggccagctaatcacgccagtaaccgtgcat
tcatcgaggcaatggtcagagaagctcaagcttacaagcaacaagttggaatctacagta
actattacaattggcaagatattgttggattggattatcatggacaatctagtttgatgc
tctggtgggcaacctatgatggaattaaggatttctcaaagttcgcacctttcggaggat
ggagcagaccaacaattcatcaatgggaaggaaccactactggcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTTTGATCGGTGCTGCAAGTGC 538 579 35 Antisense
CAACCAGTGTCTACTGCTACATTTC 283 187 85 Antisense
GATACATCTTCCCATGCTTGAGATC 660 423 236 Antisense
TGCTTGAGATCTAACTGCCCATCTG 616 577 250 Antisense
CCCATCTGCTGCCAATCAAGTTAAG 398 259 267 Antisense
AGTGCAGGAACTCATGTCTCTACTC 540 59 313 Antisense
TGGCCAGCTAATCACGCCAGTAACC 225 545 364 Antisense
GCCAGTAACCGTGCATTCATCGAGG 135 281 379 Antisense
GATGCTCTGGTGGGCAACCTATGAT 194 413 510 Antisense
AAGTTCGCACCTTTCGGAGGATGGA 163 157 553 Antisense
TGGGAAGGAACCACTACTGGCCCAT 344 543 598 Antisense
Sequence Source Affymetrix Proprietary Database