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[178235_at]

Description T26E4.2 /REP_DB=WormBase Gene ID /WP=CE16474 /TR=O45836 /GB=CAB03431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 26.7
(-3)
A 		28.7
(-2.4)
A 		47.5
(3)
A 		41.9
(1.4)
A 		21
B 29.1
(2.5)
A 		26.4
(0.9)
A 		30
(3)
A 		19.8
(-3)
A 		10
C 54.9
(3)
A 		27.5
(-0.6)
A 		9.6
(-3)
A 		53.4
(2.8)
A 		45
avr 36.9
(2.2) 		27.5
(-3) 		29
(-2.2) 		38.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 39.6
(3)
A 		23.4
(-0.7)
A 		14.1
(-2.8)
A 		13.4
(-3)
A 		19.2
(-1.7)
A 		17.5
(-2.1)
A 		26
B 43.5
(3)
A 		29.3
(-0.2)
A 		36.2
(1.4)
A 		23.7
(-1.4)
A 		18.8
(-2.5)
A 		16.6
(-3)
A 		27
C 10.8
(-1.6)
A 		42.3
(3)
A 		2.5
(-2.8)
A 		1.4
(-3)
A 		12.5
(-1.4)
A 		11.1
(-1.6)
A 		41
avr 31.3
(2.9) 		31.7
(3) 		17.6
(-1.5) 		12.8
(-3) 		16.8
(-1.7) 		15.1
(-2.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.7
(0.4)
A 		6.2
(-2.9)
A 		12.4
(3)
A 		6.1
(-3)
A 		6
B 9.3
(3)
A 		6.5
(-0.3)
A 		7
(0.3)
A 		4.2
(-3)
A 		5
C 18.2
(3)
A 		7.9
(-1.1)
A 		3.3
(-3)
A 		9
(-0.7)
A 		15
avr 12.4
(3) 		6.9
(-2.5) 		7.6
(-1.8) 		6.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.3
(1.8)
A 		8.3
(3)
A 		3.1
(-3)
A 		3.4
(-2.7)
A 		5.8
(0.1)
A 		4.3
(-1.6)
A 		5
B 15.1
(3)
A 		9.7
(-0.6)
A 		8.8
(-1.2)
A 		6.3
(-2.9)
A 		7.6
(-2.1)
A 		6.2
(-3)
A 		9
C 4
(-1.2)
A 		12.9
(3)
A 		0.6
(-2.9)
A 		0.3
(-3)
A 		4.1
(-1.2)
A 		3.7
(-1.4)
A 		13
avr 8.8
(1.7) 		10.3
(3) 		4.2
(-2.2) 		3.3
(-3) 		5.8
(-0.9) 		4.7
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13161
Sequence Type Exemplar sequence
Representative Public ID T26E4.2 NCBI
Target Description T26E4.2 /REP_DB=WormBase Gene ID /WP=CE16474 /TR=O45836 /GB=CAB03431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074531 NCBI Caenorhabditis elegans T26E4.2 (T26E4.2) mRNA, complete cds. 11/11 None
SNAP00000017590 ENSEMBL cdna:SNAP chromosome:CEL140:V:15783985:15784595:1 11/11 None
T26E4.2 ENSEMBL cdna:known chromosome:CEL140:V:15783985:15784595:1 gene:T26E4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017605 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15783984-15784595(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.2
Entrez Gene 188928 Entrez gene
SwissProt O45836 EMBL-EBI
WormBase CE16474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03431 Hypothetical protein T26E4.2 [Caenorhabditis elegans] ref|NP_506932.1| T26E4.2 [Caenorhabditis elegans] 3.0E-70
blast CAE58298 Hypothetical protein CBG01406 [Caenorhabditis briggsae] 3.0E-16
blast CAE71077 Hypothetical protein CBG17922 [Caenorhabditis briggsae] 5.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178235_AT
gttgttcctagctatattctgctcaaactttattcttcaattttctgcggaaatattggg
tgactttagttgcaccataccagcgtttaatgggagcgtctactcacaaactgcagtgaa
ttgcaacaattcctactcggatatcgcatgccaacaactataccctccagcctacgcata
ctcaatttcgagtaaatacccaaaagccggcggaacaggaggacgccccttaggatgtta
cagtagttctggaaggccaactggaccaattgatgagattatgaaacttaaagctagcat
aagctgcccaaagacttgtggatattgctgcctggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTCCTAGCTATATTCTGCTCA 105 439 15 Antisense
ATTCTGCTCAAACTTTATTCTTCAA 568 9 30 Antisense
GACTTTAGTTGCACCATACCAGCGT 127 369 76 Antisense
CAGCGTTTAATGGGAGCGTCTACTC 470 199 95 Antisense
GAGCGTCTACTCACAAACTGCAGTG 357 387 108 Antisense
TTCCTACTCGGATATCGCATGCCAA 643 699 144 Antisense
ATATCGCATGCCAACAACTATACCC 276 21 155 Antisense
CCAGCCTACGCATACTCAATTTCGA 193 273 181 Antisense
AGGACGCCCCTTAGGATGTTACAGT 227 1 234 Antisense
GTTCTGGAAGGCCAACTGGACCAAT 688 441 260 Antisense
GACTTGTGGATATTGCTGCCTGGTT 20 371 327 Antisense
Sequence Source Affymetrix Proprietary Database