[Home] | [Total List]

[178232_at]

Description M02B1.2 /REP_DB=WormBase Gene ID /WP=CE12314 /TR=Q93891 /GB=CAB03201.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 72      6grp_total > 90      4grp_total > 05      6grp_highest_sub > 04_05      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 504.4
(-0.5)
P 		352.1
(-3)
P 		382.7
(-2.5)
P 		717.2
(3)
P 		365
B 475.2
(-0.7)
P 		381.5
(-3)
P 		383.3
(-3)
P 		631.2
(3)
P 		250
C 475.2
(-0.6)
P 		361.8
(-3)
P 		373.5
(-2.8)
P 		645.2
(3)
P 		283
avr 484.9
(-0.6) 		365.1
(-3) 		379.8
(-2.7) 		664.5
(3) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 447.8
(-0.6)
P 		343.6
(-3)
P 		361.5
(-2.6)
P 		607.8
(3)
P 		552.2
(1.7)
P 		374.1
(-2.3)
P 		264
B 444.6
(-0.2)
P 		429.6
(-0.6)
P 		466.4
(0.5)
P 		544.4
(3)
P 		508.1
(1.8)
P 		355.2
(-3)
P 		189
C 421
(-1.6)
P 		414.7
(-1.8)
P 		389.2
(-2.8)
P 		546.3
(3)
P 		473.3
(0.3)
P 		382.5
(-3)
P 		164
avr 437.8
(-0.9) 		396
(-2.2) 		405.7
(-1.9) 		566.2
(3) 		511.2
(1.3) 		370.6
(-3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 183.6
(3)
P 		76.4
(-3)
P 		100.1
(-1.7)
P 		105
(-1.4)
P 		107
B 151.5
(3)
P 		94.2
(-2.5)
P 		88.8
(-3)
P 		134.5
(1.4)
P 		63
C 157.3
(3)
P 		104
(-3)
P 		130.2
(-0.1)
P 		108.8
(-2.5)
P 		53
avr 164.1
(3) 		91.5
(-3) 		106.4
(-1.8) 		116.1
(-1) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 82.6
(-2.7)
P 		122.2
(-0)
P 		78.7
(-3)
P 		154.2
(2.2)
P 		166.6
(3)
P 		91.1
(-2.2)
P 		88
B 154.7
(-0.3)
P 		143
(-1.1)
P 		113.3
(-3)
P 		144.2
(-1)
P 		206.5
(3)
P 		132.5
(-1.8)
P 		93
C 156
(3)
P 		126.5
(-0.1)
P 		99.1
(-3)
P 		109.9
(-1.9)
P 		153.1
(2.7)
P 		128
(0)
P 		57
avr 131.1
(-0.4) 		130.6
(-0.4) 		97
(-3) 		136.1
(-0) 		175.4
(3) 		117.2
(-1.5) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8801
Sequence Type Exemplar sequence
Representative Public ID M02B1.2 NCBI
Target Description M02B1.2 /REP_DB=WormBase Gene ID /WP=CE12314 /TR=Q93891 /GB=CAB03201.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070045 NCBI Caenorhabditis elegans M02B1.2 (M02B1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031740 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12845919:12847985:1 11/11 None
M02B1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12846612:12847985:1 gene:M02B1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031735 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12846617-12847991(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B1.2
Entrez Gene 187394 Entrez gene
SwissProt Q93891 EMBL-EBI
WormBase CE12314 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE74558 Hypothetical protein CBG22317 [Caenorhabditis briggsae] 3.0E-59
blast CAB03201 Hypothetical protein M02B1.2 [Caenorhabditis elegans] ref|NP_502446.1| M02B1.2 [Caenorhabditis elegans] 6.0E-54
blast CAB03201 Hypothetical protein M02B1.2 [Caenorhabditis elegans] ref|NP_502446.1| M02B1.2 [Caenorhabditis elegans] 8.0E-50
blast CAE74558 Hypothetical protein CBG22317 [Caenorhabditis briggsae] 7.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502446.1 3 7-29,39-61,100-122
M02B1.2 3 7-29,39-61,100-122
GENEFINDER00000031740 4 12-34,54-76,83-105,145-167
Sequence
Target Sequence 
>C. ELEGANS:178232_AT
agttcgtagtaacacttcttctgatcggttgctatgccacattcctgtttgttctctctc
tattgggactcatctcattatgttttctcaattcaattcttctgtttgtgttcatcctgg
gtcaaacggcaatgatgttcttgcttggaatctcgtttgcattcacgctgacagtaagaa
aacgtctacatcttaaattggaagacatttggaggaataaaccaaactgtttggaaggtc
aaccatgtgttccactggaaacttttagaagttctgagaatttgctcatttgtcttttag
tgatatttctcgtggtacaggtaatccaatacattgcaagttggtacctctgtgagcggc
ggtccagtcaagaaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGTAGTAACACTTCTTCTGAT 542 63 29 Antisense
TCTTCTGATCGGTTGCTATGCCACA 500 617 45 Antisense
TTTGTTCTCTCTCTATTGGGACTCA 273 667 76 Antisense
GGGACTCATCTCATTATGTTTTCTC 362 495 93 Antisense
AATTCTTCTGTTTGTGTTCATCCTG 359 177 123 Antisense
GTTCATCCTGGGTCAAACGGCAATG 327 437 138 Antisense
GATGTTCTTGCTTGGAATCTCGTTT 664 409 162 Antisense
AATCTCGTTTGCATTCACGCTGACA 289 169 177 Antisense
GAAGGTCAACCATGTGTTCCACTGG 215 335 262 Antisense
GCAAGTTGGTACCTCTGTGAGCGGC 1 319 364 Antisense
GAGCGGCGGTCCAGTCAAGAAAAGT 72 385 382 Antisense
Sequence Source Affymetrix Proprietary Database