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[178229_at]

Description F01D5.7 /REP_DB=WormBase Gene ID /WP=CE18564 /TR=Q9XVB2 /GB=CAB04038.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 63      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 39
(1.7)
A 		19.9
(-0.9)
A 		48.4
(3)
A 		4.6
(-3)
A 		44
B 32.3
(0.9)
A 		43.1
(3)
A 		20.9
(-1.4)
A 		12.9
(-3)
A 		30
C 17.4
(-1.2)
A 		6
(-3)
A 		20.9
(-0.7)
A 		44.4
(3)
A 		38
avr 29.6
(2.7) 		23
(-1.5) 		30.1
(3) 		20.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 44.2
(-2)
A 		34.2
(-2.7)
A 		29.1
(-3)
A 		35.5
(-2.6)
A 		51.2
(-1.6)
A 		123.9
(3)
P 		95
B 15
(-2.6)
A 		9.9
(-3)
A 		9.8
(-3)
A 		25.2
(-1.7)
A 		81.2
(3)
A 		70.9
(2.1)
M 		71
C 24.2
(-1.8)
A 		26.7
(-1.5)
A 		29.1
(-1.2)
A 		13.3
(-3)
A 		64.1
(2.8)
A 		66.2
(3)
M 		53
avr 27.8
(-2.5) 		23.6
(-2.9) 		22.7
(-3) 		24.7
(-2.8) 		65.5
(1) 		87
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.2
(3)
A 		4.3
(-1.4)
A 		12.7
(2.3)
A 		0.7
(-3)
A 		14
B 10.3
(2.8)
A 		10.6
(3)
A 		4.9
(-1.4)
A 		2.8
(-3)
A 		8
C 5.8
(1.2)
A 		1.7
(-3)
A 		7.3
(2.8)
A 		7.5
(3)
A 		6
avr 10.1
(3) 		5.5
(-1.3) 		8.3
(1.3) 		3.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.1
(-2.5)
A 		12.2
(-1.5)
A 		6.3
(-3)
A 		9
(-2.3)
A 		15.4
(-0.7)
A 		30.2
(3)
P 		24
B 5.2
(-2.5)
A 		3.3
(-2.8)
A 		2.4
(-3)
A 		6.7
(-2.2)
A 		33
(3)
A 		26.4
(1.7)
M 		31
C 9
(-1.1)
A 		8.1
(-1.3)
A 		7.4
(-1.6)
A 		2.7
(-3)
A 		20.7
(2.5)
A 		22.2
(3)
M 		20
avr 7.4
(-2.4) 		7.9
(-2.3) 		5.4
(-3) 		6.1
(-2.8) 		23
(2.1) 		26.3
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3518
Sequence Type Exemplar sequence
Representative Public ID F01D5.7 NCBI
Target Description F01D5.7 /REP_DB=WormBase Gene ID /WP=CE18564 /TR=Q9XVB2 /GB=CAB04038.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026895(11), NM_001026896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026895 NCBI Caenorhabditis elegans F01D5.7a (F01D5.7) mRNA, complete cds. 11/11 None
NM_001026896 NCBI Caenorhabditis elegans F01D5.7b (F01D5.7) mRNA, complete cds. 11/11 None
GENEFINDER00000039848 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14006403:14010469:1 11/11 None
F01D5.7a ENSEMBL cdna:known chromosome:CEL140:II:14008558:14010475:1 gene:F01D5.7 11/11 None
F01D5.7b ENSEMBL cdna:known chromosome:CEL140:II:14008558:14010469:1 gene:F01D5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039843 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14008554-14010466(+) 100.0 100.0
Public Domain and Genome References
Ensembl F01D5.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04038 Hypothetical protein F01D5.7a [Caenorhabditis elegans] ref|NP_001022066.1| F01D5.7a [Caenorhabditis elegans] 0.0
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 0.0
blast CAB04042 Hypothetical protein F01D5.6 [Caenorhabditis elegans] ref|NP_496936.1| F01D5.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007621 EMBL-EBI Protein of unknown function DUF477 2.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039848 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:178229_AT
agctctgccgatcttggaagcttccttcagcccaactccatgaacttttccacgtttgct
aacttgttcgaaacggatgtatacgccttcgactattcaggatacggcttttcctcgggc
acccagagcgagaagaacatgtacgccgatgtgagagcggtatatgaacatattttgaag
accagaccggataagaagattgtagtaattggatacagtatcggaacgactgcagcggta
gacttggcagcttcaaatccggatagactagttggagttgtgctgattgctccgttgacc
agtgcactgaggatgttctgcaacaatcctgacaaggaaacgacttgcattgacaaaatc
tgccacatcaacacccgagtgctcatctgccatggagaccatgatcaacgcatcccaatg
actcatggaatggctctctatgaaaatctcaaaaacccagtgccaccactgatcgtccat
ggcgccaatcatcattcaatcattagcggagagtatattgaagtctttactagaattgca
agcttcatgcggaacgagacccttctgagctgccgagccaatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCTGCCGATCTTGGAAGCTTCC 214 81 397 Antisense
CCAACTCCATGAACTTTTCCACGTT 483 275 428 Antisense
TTTCCACGTTTGCTAACTTGTTCGA 332 667 443 Antisense
AAACGGATGTATACGCCTTCGACTA 445 127 467 Antisense
TTTCCTCGGGCACCCAGAGCGAGAA 566 669 506 Antisense
GAACGACTGCAGCGGTAGACTTGGC 652 345 620 Antisense
AGACTTGGCAGCTTCAAATCCGGAT 320 71 636 Antisense
TGATCAACGCATCCCAATGACTCAT 328 565 798 Antisense
CCATGGCGCCAATCATCATTCAATC 656 271 873 Antisense
AAGCTTCATGCGGAACGAGACCCTT 506 149 936 Antisense
CTTCTGAGCTGCCGAGCCAATCAAA 195 219 958 Antisense
Sequence Source Affymetrix Proprietary Database