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[178227_at]

Description C02F4.5 /REP_DB=WormBase Gene ID /WP=CE07856 /TR=Q93186 /GB=CAB02721.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 19.3
(-1.5)
A 		57.9
(3)
A 		56.1
(2.8)
A 		6.7
(-3)
A 		51
B 22.9
(-3)
A 		41.2
(3)
A 		37.8
(1.9)
A 		27.3
(-1.6)
A 		18
C 20.7
(-1.8)
A 		80.2
(3)
A 		5.2
(-3)
A 		68.2
(2)
A 		75
avr 21
(-3) 		59.8
(3) 		33
(-1.1) 		34.1
(-1) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 71.8
(2.3)
A 		44.3
(-0.1)
A 		39.1
(-0.5)
A 		36.7
(-0.7)
A 		79.7
(3)
A 		10.4
(-3)
A 		69
B 63.5
(3)
A 		31
(-0.5)
A 		21.4
(-1.5)
A 		40
(0.5)
A 		7.9
(-3)
A 		15.1
(-2.2)
A 		56
C 34
(-0.4)
A 		33.1
(-0.5)
A 		67.9
(3)
A 		11.1
(-2.6)
A 		32.4
(-0.5)
A 		7.5
(-3)
A 		60
avr 56.4
(3) 		36.1
(0.3) 		42.8
(1.2) 		29.3
(-0.6) 		40
(0.8) 		11
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7
(-0.4)
A 		12.6
(2.1)
A 		14.7
(3)
A 		1
(-3)
A 		14
B 7.3
(-1)
A 		10.2
(3)
A 		8.8
(1.1)
A 		5.8
(-3)
A 		4
C 6.9
(-1.6)
A 		23
(3)
A 		1.8
(-3)
A 		11.5
(-0.3)
A 		21
avr 7.1
(-2.3) 		15.3
(3) 		8.4
(-1.5) 		6.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 13.2
(-0)
A 		15.8
(0.7)
A 		8.5
(-1.3)
A 		9.3
(-1.1)
A 		24
(3)
A 		2.5
(-3)
A 		22
B 22.1
(3)
A 		10.3
(-0.7)
A 		5.2
(-2.4)
A 		10.6
(-0.7)
A 		3.2
(-3)
A 		5.6
(-2.2)
A 		19
C 12.6
(1.1)
A 		10.1
(0.1)
A 		17.3
(3)
A 		2.2
(-3)
A 		10.5
(0.3)
A 		2.5
(-2.9)
A 		15
avr 16
(3) 		12.1
(1.1) 		10.3
(0.3) 		7.4
(-1.1) 		12.6
(1.4) 		3.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178227_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10216
Sequence Type Exemplar sequence
Representative Public ID C02F4.5 NCBI
Target Description C02F4.5 /REP_DB=WormBase Gene ID /WP=CE07856 /TR=Q93186 /GB=CAB02721.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069541 NCBI Caenorhabditis elegans C02F4.5 (C02F4.5) mRNA, complete cds. 11/11 None
C02F4.5 ENSEMBL cdna:known chromosome:CEL140:IV:10523407:10524117:-1 gene:C02F4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10523412-10524123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F4.5
Entrez Gene 182120 Entrez gene
SwissProt Q93186 EMBL-EBI
WormBase CE07856 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02721 Hypothetical protein C02F4.5 [Caenorhabditis elegans] ref|NP_501942.1| C02F4.5 [Caenorhabditis elegans] 1.0E-29
Sequence
Target Sequence 
>C. ELEGANS:178227_AT
tacgcctacctgccaagacgtagatcgtcttctagttacccctgttttttaggcctaaag
gtaagtaagaaagtcagaacctgtgacaaaaaaacgccaccacttgtcatccttcttggt
gctttaattcgagattccttactgagagatttttcaaaaaaagcgtcgtaccgtatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGCCTACCTGCCAAGACGTAGAT 326 649 19 Antisense
GACGTAGATCGTCTTCTAGTTACCC 119 379 35 Antisense
GTAAGTAAGAAAGTCAGAACCTGTG 35 463 79 Antisense
CAGAACCTGTGACAAAAAAACGCCA 707 137 93 Antisense
CAAAAAAACGCCACCACTTGTCATC 131 189 105 Antisense
CACCACTTGTCATCCTTCTTGGTGC 35 203 116 Antisense
CTTGTCATCCTTCTTGGTGCTTTAA 124 219 121 Antisense
TCATCCTTCTTGGTGCTTTAATTCG 693 619 125 Antisense
GGTGCTTTAATTCGAGATTCCTTAC 586 501 136 Antisense
GAGATTCCTTACTGAGAGATTTTTC 456 395 149 Antisense
CAAAAAAAGCGTCGTACCGTATCAT 129 189 173 Antisense
Sequence Source Affymetrix Proprietary Database