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[178226_at]

Description T11A5.2 /REP_DB=WormBase Gene ID /WP=CE06408 /TR=Q22382 /GB=CAA96682.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 19      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 3.9
(-3)
A 		3.9
(-3)
A 		4.2
(-3)
A 		63.2
(3)
A 		59
B 35.5
(0.6)
A 		56.5
(3)
A 		5.6
(-2.8)
A 		3.7
(-3)
A 		53
C 5.8
(-3)
A 		24.4
(-1.5)
A 		7.2
(-2.9)
A 		78.9
(3)
A 		73
avr 15.1
(-1.7) 		28.3
(0.2) 		5.7
(-3) 		48.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.4
(-2.1)
A 		4.2
(-3)
A 		41.2
(3)
A 		3.9
(-3)
A 		6.1
(-2.6)
A 		4.2
(-3)
A 		37
B 6.1
(-2.4)
A 		35.7
(3)
A 		31.1
(2.2)
A 		2.7
(-3)
A 		14.1
(-0.9)
A 		3.2
(-2.9)
A 		33
C 2.7
(-3)
A 		46.7
(3)
A 		5
(-2.7)
A 		9.8
(-2)
A 		5.2
(-2.7)
A 		7
(-2.4)
A 		44
avr 6.1
(-2.7) 		28.9
(3) 		25.8
(2.2) 		5.5
(-2.8) 		8.5
(-2.1) 		4.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.4
(-2.6)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		9.2
(3)
A 		8
B 11.3
(1.8)
A 		14
(3)
A 		1.3
(-2.8)
A 		0.8
(-3)
A 		13
C 1.9
(-3)
A 		7
(-0.3)
A 		2.5
(-2.7)
A 		13.3
(3)
A 		11
avr 4.9
(0.2) 		7.3
(2.5) 		1.6
(-3) 		7.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-2.5)
A 		1.5
(-2.6)
A 		9
(3)
A 		1
(-3)
A 		1.8
(-2.4)
A 		1
(-3)
A 		8
B 2.1
(-2.3)
A 		11.9
(3)
A 		7.5
(0.6)
A 		0.7
(-3)
A 		5.7
(-0.3)
A 		1.2
(-2.7)
A 		11
C 1
(-3)
A 		14.3
(3)
A 		1.3
(-2.9)
A 		2
(-2.5)
A 		1.7
(-2.7)
A 		2.3
(-2.4)
A 		13
avr 1.6
(-2.7) 		9.2
(3) 		5.9
(0.5) 		1.2
(-3) 		3.1
(-1.6) 		1.5
(-2.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12035
Sequence Type Exemplar sequence
Representative Public ID T11A5.2 NCBI
Target Description T11A5.2 /REP_DB=WormBase Gene ID /WP=CE06408 /TR=Q22382 /GB=CAA96682.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073143(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073143 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-17) (srab-17) mRNA, complete cds. 9/11 None
SNAP00000037716 ENSEMBL cdna:SNAP chromosome:CEL140:V:9869210:9870969:-1 9/11 None
GENEFINDER00000037723 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9869210:9870993:-1 9/11 None
T11A5.2 ENSEMBL cdna:known chromosome:CEL140:V:9869210:9870993:-1 gene:T11A5.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9869235-9870993(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srab-17
Ensembl T11A5.2
Entrez Gene 188404 Entrez gene
SwissProt Q22382 EMBL-EBI
WormBase CE36198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96682 Hypothetical protein T11A5.2 [Caenorhabditis elegans] ref|NP_505544.2| Serpentine Receptor, class AB (class A-like) family member (srab-17) [Caenorhabditis elegans] 1.0E-180
blast CAA96682 Hypothetical protein T11A5.2 [Caenorhabditis elegans] ref|NP_505544.2| Serpentine Receptor, class AB (class A-like) family member (srab-17) [Caenorhabditis elegans] 1.0E-174
blast CAA96682 Hypothetical protein T11A5.2 [Caenorhabditis elegans] ref|NP_505544.2| Serpentine Receptor, class AB (class A-like) family member (srab-17) [Caenorhabditis elegans] 1.0E-172
blast CAA96683 Hypothetical protein T11A5.3 [Caenorhabditis elegans] ref|NP_505545.2| Serpentine Receptor, class AB (class A-like) family member (srab-18) [Caenorhabditis elegans] 1.0E-102
blast CAA96683 Hypothetical protein T11A5.3 [Caenorhabditis elegans] ref|NP_505545.2| Serpentine Receptor, class AB (class A-like) family member (srab-18) [Caenorhabditis elegans] 3.0E-98
blast CAA96683 Hypothetical protein T11A5.3 [Caenorhabditis elegans] ref|NP_505545.2| Serpentine Receptor, class AB (class A-like) family member (srab-18) [Caenorhabditis elegans] 4.0E-97
blast CAE72270 Hypothetical protein CBG19390 [Caenorhabditis briggsae] 3.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505544.2 6 21-43,58-80,101-123,141-163,246-268,273-295
T11A5.2 6 21-43,58-80,101-123,141-163,246-268,273-295
SNAP00000037716 6 13-35,50-72,93-115,133-155,254-276,281-303
GENEFINDER00000037723 6 21-43,58-77,117-139,157-179,277-299,304-326
Sequence
Target Sequence 
>C. ELEGANS:178226_AT
gtattccgtctcatgtacaactctggcttatggatcacaaactctactgccgtgtcctta
attcttgaacgatggttagctacaaaacgcagtatgacgtacgaaaaggactctacgata
attggattattgttggcgattgttcattttctaattgctgccttgccactttgcttcttg
tattcacaaactcgttttgatggagccgtaatgtactattgtgtgacagcaacgccctct
gctccatattctgctcaagttggagcaacagtcagtatttgttttcaagttgttgcaaga
attgcattcgaattcttgttacgtgaaaacaaagtattagttttggaagcgttaagtggc
gataaacagaactctcttcagaagcacaaggaattcgatgttcaatcacccctttcaaat
cgatatcaattggaacaaaacattaggttaattgagtcaaatcttctcttcagaataaaa
acaaaacgaattccagttcaattactgctctcaaaacgtttgccaacatgtcgatccacg
gaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCCGTCTCATGTACAACTCTG 691 451 364 Antisense
GTACAACTCTGGCTTATGGATCACA 512 461 378 Antisense
TATGGATCACAAACTCTACTGCCGT 456 655 392 Antisense
CTGCCGTGTCCTTAATTCTTGAACG 590 235 410 Antisense
GTTCATTTTCTAATTGCTGCCTTGC 148 445 505 Antisense
ACTATTGTGTGACAGCAACGCCCTC 66 103 578 Antisense
ATTGCATTCGAATTCTTGTTACGTG 288 5 664 Antisense
AAACAGAACTCTCTTCAGAAGCACA 188 129 727 Antisense
ATTCCAGTTCAATTACTGCTCTCAA 546 7 853 Antisense
ACTGCTCTCAAAACGTTTGCCAACA 85 99 867 Antisense
TTTGCCAACATGTCGATCCACGGAA 670 667 882 Antisense
Sequence Source Affymetrix Proprietary Database