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[178223_at] 7TM receptor, sre family

Description W05H5.6 /REP_DB=WormBase Gene ID /WP=CE14646 /TR=O18175 /GB=CAB03481.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 34      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 49
(-3)
A 		98.3
(2.1)
M 		57.3
(-2.1)
A 		107.3
(3)
M 		58
B 54.4
(-3)
A 		91
(3)
A 		69.6
(-0.5)
A 		91.3
(3)
A 		37
C 56.8
(-1.8)
P 		110.9
(3)
P 		42.7
(-3)
A 		88.6
(1)
A 		68
avr 53.4
(-3) 		100.1
(3) 		56.5
(-2.6) 		95.7
(2.4) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 66.9
(0.5)
A 		47.2
(-2.5)
A 		49
(-2.2)
P 		43.8
(-3)
A 		83.3
(3)
A 		74.9
(1.7)
A 		40
B 45.6
(-0.5)
A 		38.7
(-1.1)
P 		34.1
(-1.5)
A 		83.9
(3)
P 		17.9
(-3)
A 		32.5
(-1.7)
P 		66
C 46.8
(-1.7)
A 		32.4
(-3)
P 		43.8
(-2)
A 		99.2
(3)
A 		33.1
(-2.9)
P 		61.4
(-0.4)
M 		67
avr 53.1
(-0.7) 		39.4
(-3) 		42.3
(-2.5) 		75.6
(3) 		44.8
(-2.1) 		56.3
(-0.2) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.8
(-0.3)
A 		21.3
(3)
M 		15
(-3)
A 		15.7
(-2.3)
M 		6
B 17.4
(-1.8)
A 		22.5
(3)
A 		16.1
(-3)
A 		19.5
(0.2)
A 		6
C 18.8
(-1.6)
P 		31.9
(3)
P 		14.9
(-3)
A 		14.9
(-3)
A 		17
avr 18
(-1.4) 		25.2
(3) 		15.3
(-3) 		16.7
(-2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.3
(-2.3)
A 		16.8
(-0.5)
A 		10.7
(-3)
P 		11.1
(-2.8)
A 		25.1
(3)
A 		18.2
(0.1)
A 		14
B 15.9
(0.5)
A 		12.9
(-0.7)
P 		8.3
(-2.6)
A 		22.2
(3)
P 		7.3
(-3)
A 		12.1
(-1.1)
P 		15
C 17.4
(1.2)
A 		9.9
(-3)
P 		11.2
(-2.3)
A 		19.9
(2.7)
A 		10.7
(-2.5)
P 		20.5
(3)
M 		11
avr 15.2
(1) 		13.2
(-0.6) 		10.1
(-3) 		17.7
(3) 		14.4
(0.4) 		16.9
(2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178223_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3729
Sequence Type Exemplar sequence
Representative Public ID W05H5.6 NCBI
Target Description W05H5.6 /REP_DB=WormBase Gene ID /WP=CE14646 /TR=O18175 /GB=CAB03481.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064248(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064248 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-33) (sre-33) mRNA, complete cds. 10/11 None
SNAP00000019749 ENSEMBL cdna:SNAP chromosome:CEL140:II:12453544:12454596:1 10/11 None
W05H5.6 ENSEMBL cdna:known chromosome:CEL140:II:12453328:12454596:1 gene:W05H5.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019753 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12453324-12454593(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-33
Ensembl W05H5.6
Entrez Gene 189226 Entrez gene
SwissProt O18175 EMBL-EBI
WormBase CE38113 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03481 Hypothetical protein W05H5.6 [Caenorhabditis elegans] ref|NP_496649.2| Serpentine Receptor, class E (epsilon) family member (sre-33) [Caenorhabditis elegans] sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 (Protein sre-33) 0.0
blast CAB03481 Hypothetical protein W05H5.6 [Caenorhabditis elegans] ref|NP_496649.2| Serpentine Receptor, class E (epsilon) family member (sre-33) [Caenorhabditis elegans] sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 (Protein sre-33) 1.0E-157
blast CAE73501 Hypothetical protein CBG20958 [Caenorhabditis briggsae] 1.0E-114
blast CAI46624 Hypothetical protein W05H5.5 [Caenorhabditis elegans] ref|NP_496648.2| Serpentine Receptor, class E (epsilon) family member (sre-35) [Caenorhabditis elegans] 1.0E-113
blast CAE73501 Hypothetical protein CBG20958 [Caenorhabditis briggsae] 9.0E-92
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 3.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496649.2 7 28-50,63-85,134-156,165-187,197-214,251-273,283-305
W05H5.6 7 28-50,63-85,134-156,165-187,197-214,251-273,283-305
SNAP00000019749 5 62-84,93-115,125-142,179-201,211-233
Sequence
Target Sequence 
>C. ELEGANS:178223_AT
aatgccagcaattctccttattatcagccaatttttatcaatctccatggcttttggtct
tctgtttcaaaaggtcggaccactttctgctcatttcccctggatgataagctgcccgat
ttcagtggctgtgagcaagattttagaaaaattttccaacatgaaacttgttcaggcata
tgtgttcgtgaaaaaagtcaatgaatcgttccgacgggagattaagaatccgggtaggaa
gcgaattttcacactttcccagcagtttcaagtcaaggagaatctaagagtgttacatct
tggtacccgcttggtctttgccgtcctatcttttatcggaatttgtgggtgtggaatcgc
ggcgctccactacaaaattgtaccgtcctactattgccatctcatcgaaaatgtgctctt
tttaaacccatttctcattggcttaaccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCCAGCAATTCTCCTTATTATC 685 165 510 Antisense
AATCTCCATGGCTTTTGGTCTTCTG 523 169 549 Antisense
TTCCCCTGGATGATAAGCTGCCCGA 704 667 604 Antisense
AGCTGCCCGATTTCAGTGGCTGTGA 321 81 619 Antisense
TCACACTTTCCCAGCAGTTTCAAGT 583 625 758 Antisense
AGAGTGTTACATCTTGGTACCCGCT 335 67 796 Antisense
TCTTTGCCGTCCTATCTTTTATCGG 609 615 824 Antisense
AAATTGTACCGTCCTACTATTGCCA 291 115 884 Antisense
CCTACTATTGCCATCTCATCGAAAA 667 267 896 Antisense
TGCTCTTTTTAAACCCATTTCTCAT 394 577 923 Antisense
CCCATTTCTCATTGGCTTAACCGCA 251 257 936 Antisense
Sequence Source Affymetrix Proprietary Database